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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

Basic information

species Zea mays
transcript GRMZM2G370741_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 3'ss of exon 7
gtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC
        | | ||     || |  ||| ||   | |       ||  | |   | | || |||| |||| |||  |||  ||  |||| |      || ||  |||  |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||| |||||||
--------gtttccatcctagcccaattatccaatgt-------tgtttcttaccccttg-atttgttgtaaccatcttagaaatactaaa-----gaccatcttttaaatgcagATGATGTGGAGGCTAAATTTCTTTGTGGCCTTCTGTTGCATTGTCCTTGACAATGATTACATGCTGTATTATATATGTCCAATGCACACACTTTTTACTC

upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
gtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagt-ttagtctcctgta--tttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC
       |   |  ||||    ||||  | |   | ||   || |  || |   |   || |   |||| | ||||    |||   ||| || || ||| |  |   || | ||||  |||||||||||||| || | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
------gtaagag-tcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT

upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G25780.1 (Glycine max), 3'ss of exon 8
------gtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagacc-aataactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC
      | | |  ||  |||| |  | |   ||||| |||| |  | |  ||      ||||    | |||| ||||||    |||   ||| || || ||| ||    |  |  |||| |||||||||||||| || | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtaatagagtccttg--acctta--aataccatttt-tgcttta-ctttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT

upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
gtgcctatgctacctc--atcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC
||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | |||||||||||||| || ||||||||||||||||||| || |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcttgttaccgccttttaagcactagaccaataactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC
                                caataac  putative branch site (score: 2)
                                         tactttcc  putative PPT
                                 aataactatacttt  TA-rich tract