Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTATTAAGATTGCTTGCTGCTTCTTGTCTGTAATTTTGATATGGGAAATCCCTGGGGTATTTGAATTATTGTGGGGCCCCTTTACGTTTCTGTTAGgtaagttattgatgtagttttgtatgacattctccctaccagtcatgcttaggagttcaggaccaaccttaattattttctattcag

Basic information

species Zea mays
transcript GRMZM2G370741_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 8
ATGGCTATTAAGATTGCTTGCTGCTTCTTGTCTGTAATTTTGATATGGGAAATCCCTGGGGTATTTGAATTATTGTGGGGCCCCTTTACGTTTCTGTTAGgtaagttattgatgtagttttgtatgacattctccctaccagtcatgcttaggagttcaggaccaaccttaattattttctattcag
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| || |||| ||||||||| |||||  ||||| ||||||  ||||  | |    |  |||| | |  |  |  ||||  ||||| || |      ||| |  |  |||  | | |||
ATGGCTATTAAGATTGCTTGCTGCTTCTTGACTGTCATTTTGATATGGGAAATTCCTGGGGTATTTGAATTTTTATGGGCCCCCTTTACATTTCTTCTAGgtgagttatgcatgttttctgtcttagcattattctcattaaccatggataggattttac-----accattttcctttcatgtacag