1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaactctgtcttggatgcatgtacatttacggagtgcttggaaaatagtacctttgtgctgttattttgactctttgaatgttacgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATG
species | Zea mays |
transcript | GRMZM2G361847_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAG GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATEST: gi|38687312|gb|CK144343.1|CK144343
genomic: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAGgtaactctgt ... acgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAAT
EST: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAG GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATEST: gi|211145672|gb|FL260531.1|FL260531
genomic: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAGgtaactctgt ... acgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAAT
EST: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAG GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATEST: gi|211508656|gb|FL262678.1|FL262678
genomic: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAGgtaactctgt ... acgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAAT
EST: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAG GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAAT
genomic: AGCTGAAACTTGCACAACTGGAACAGGAACTCCAGAAAGCTCGCCAGCAGgtaactctgt ... acgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAAT
tggaaaatagtacctttgtgctgttattttgactctttgaatgttacgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATG
ttttgac putative branch site (score: 3)
cgctttc putative PPT
tgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctgtcttggatgcatgtacatttacggagtgcttggaaaatagtacctttgtgctgttattttgactctttgaatgttacgctttcagGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA