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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGAATGGAAGTGGTGCGGTTGTACCTTCTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAGgtaatatcgtggttcctttttctcaagttcttatttaaccttgtattgcttgttattaattgcatttttgaattttcatatcttag

Basic information

species Zea mays
transcript GRMZM2G361847_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361847_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 4
ATGGAGAATGGA---AGTGGTGCGGTTGTACCTTCTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAGgtaatatcgtggttcctttttctcaagt-tcttatttaaccttgtattgcttgttattaattgcatttttgaatttt-catatcttag
 | || || |||   |||||||| ||  |  ||||||| ||||||||||| || ||||| ||||| |||| | ||||||||||||| | ||  | ||||| |||  |   || |   || | || |  | |||  ||| ||||||| ||| ||  | |||  |||    |||
TTAGAAAACGGACATAGTGGTGCAGTCATGGCTTCTAACTCTTCAGATAGATCTGACAGATCTGACAAACTTATGGACCAAAAGgtgacattttagttccgtttcttttcgtatacaatgtcacttaatcttg--tgtgattaatttcatattgtattttggcatgcaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211145673|gb|FL260532.1|FL260532
EST:     CTAATTCTTCAGATAGGTCCGACA-GTCTGATAAACCTTTGGACCAAAAG                         ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
genomic: CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAGgtaatatcgt ... catatcttagACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
EST: gi|38687312|gb|CK144343.1|CK144343
EST:     CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAG                         ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
genomic: CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAGgtaatatcgt ... catatcttagACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
EST: gi|211145672|gb|FL260531.1|FL260531
EST:     CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAG                         ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
genomic: CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAGgtaatatcgt ... catatcttagACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
EST: gi|211508656|gb|FL262678.1|FL262678
EST:     CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAG                         ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG
genomic: CTAATTCTTCAGATAGGTCCGACAGGTCTGATAAACCTTTGGACCAAAAGgtaatatcgt ... catatcttagACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTG