1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcattttccgaactccggtgttcttctgaggatctcgacttctgtaagcaatgtagtagggaatactctgacccgtttggcaaaccacatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGGTCGTTGACAGGATTGAGGCGGTGGTCCAGAGCAAGCCCAAACGCACTG
species | Zea mays |
transcript | GRMZM2G356938_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|88750923|gb|DY535064.1|DY535064
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: AAACCCCAACGTTTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|149015427|gb|EE045281.2|EE045281
genomic: AAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|76287148|gb|DV026716.1|DV026716
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTTTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTTTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|78120556|gb|DV538940.1|DV538940
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|148942705|gb|EC887729.2|EC887729
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTCTCATCCGTGATCCCTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|91873921|gb|EB403878.1|EB403878
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|89761104|gb|DY689252.1|DY689252
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTCCTGACGCCGGAGEST: gi|78082535|gb|DV510947.1|DV510947
genomic: CCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGEST: gi|71318846|gb|DR796184.1|DR796184
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
EST: CAAACCCCAACGTTTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAG ATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
genomic: CAAACCCCAACGTCTCATCCGTGATCACTGGAGCCACCAAAGAAAGCCAGgtgcattttc ... acatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAG
ctgtaagcaatgtagtagggaatactctgacccgtttggcaaaccacatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGGTCGTTGACAGGATTGAGGCGGTGGTCCAGAGCAAGCCCAAACGCACTG
ctctgac putative branch site (score: 59)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcattttccgaactccggtgttcttctgaggatctcgacttctgtaagcaatgtagtagggaatactctgacccgtttggcaaaccacatgaacagATCGTGGAGAACATGAAGGCTCTAGATGTCATCCCACTGCTGACGCCGGAGGTCGTTGACAGGATTGAGGCGGTGGTCCAGAGCAAGCCCAAACGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG