1 5' 3' | 2 5' 3' | 3 5' 3' |
...gctgttttctctttatgttatgtatatctttattttgttggtatttttcttctggttactttattatagctaacccgtttcttgtggcttgggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGGCTAAAACCTATCGCCGCTGAACTCGGCGTTTCGTTAGCTCAACTCTCCA
species | Zea mays |
transcript | GRMZM2G356938_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGAACATACCTG-TGATTAGCAGGTTTGCACTAGACAATTCCAAG AACCTGGCAAATAGGTCCTTGGTTGACGACACGCTTCGAAAAGTGAATGGGEST: gi|71428195|gb|DR809245.1|DR809245
genomic: AAAGGGAACATACCTGCTGA-TAGCAGGTTTGCACTAGACAATTACAAGgtatttgggg ... gggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGG
EST: CCAAAGGGGACATACCTGCTGATAGCAGGTTTGCACTAGACAATTACAAG AACCTGGCAAATAGGTCCCTGGGTGACGACACGCTTCGAAAAGTGAATGGGEST: gi|78084452|gb|DV512845.1|DV512845
genomic: CCAAAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGACAATTACAAGgtatttgggg ... gggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGG
EST: CAGAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGAACA-TTACCAG AACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAEST: gi|78120556|gb|DV538940.1|DV538940
genomic: CAAAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGA-CAATTACAAGgtatttgggg ... gggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGA
EST: GCAGGTTTGCATTAGACAATTACAAG AACCT-GCAAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGEST: gi|148942705|gb|EC887729.2|EC887729
genomic: GCAGGTTTGCACTAGACAATTACAAGgtatttgggg ... gggtttccagAACCTGGC-AAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGG
EST: TGCACTAGACAATTACAAG AACCTGGCAAATAGGTCCCTGGTGGAGGACACGCTTCGAAAAGTGAAGGGGEST: gi|13150478|gb|BG320800.1|BG320800
genomic: TGCACTAGACAATTACAAGgtatttgggg ... gggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGG
EST: CCAAAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGACAATTACAAR AACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGGEST: gi|78082535|gb|DV510947.1|DV510947
genomic: CCAAAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGACAATTACAAGgtatttgggg ... gggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGG
EST: CCAAAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGACAATTACAAG AACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGG
genomic: CCAAAGGGAACATACCTGCTGATAGCAGGTTTGCACTAGACAATTACAAGgtatttgggg ... gggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGG
tttcttctggttactttattatagctaacccgtttcttgtggcttgggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGGCTAAAACCTATCGCCGCTGAACTCGGCGTTTCGTTAGCTCAACTCTCCA
agctaac putative branch site (score: 74)
tttcc putative PPT
ttactttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgttttctctttatgttatgtatatctttattttgttggtatttttcttctggttactttattatagctaacccgtttcttgtggcttgggtttccagAACCTGGCAAATAGGTCCCTGGTTGACGACACGCTTCGAAAAGTGAATGGGCTAAAACCTATCGCCGCTGAACTCGGCGTTTCGTTAGCTCAACTCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
-ctgtttt
- - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttg