1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCGCAGCAGATCACCGAGGCCTGGGCAGTCGCCAACCGCCTCGACCTCGTGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcggagtacatggttactcattcaatctccccaaaatctcgatttgtttaccgattcatgataatgcggcggcggcgccacctctctctctctc...
species | Zea mays |
transcript | GRMZM2G356938_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTGCCACTTTACGGCACCTATGGCATCGGATTGACTEST: gi|71428195|gb|DR809245.1|DR809245
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACTEST: gi|78084452|gb|DV512845.1|DV512845
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACTEST: gi|76019266|gb|DT946436.1|DT946436
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTTGCCACTTTACAGCACCTATGGCATCGGATTTGAEST: gi|148942706|gb|EC887730.2|EC887730
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTT-GCCACTTTACAGCACCTATGGCATCGGATT-GA
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACTEST: gi|211498539|gb|FL364230.1|FL364230
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TCGGACCCATCGTCGAGCAGCCGGAGTACAACCTTTTCTCCAGACGCAAG GKTGAGTCTGAGTTCTTGCCACTTTACAGCACCTATGGCATCGGATTGACTEST: gi|149015428|gb|EE045282.2|EE045282
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACTEST: gi|13150478|gb|BG320800.1|BG320800
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTTTTCTCCAGACACAAG GTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACTEST: gi|149086227|gb|EE175767.2|EE175767
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
EST: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAG GTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
genomic: TGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcgg ... ttttctgcagGTTGAGTCTGAGTTTTTGCCACTTTACAGCACCTATGGCATCGGATTGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCAGCAGATCACCGAGGCCTGGGCAGTCGCCAACCGCCTCGACCTCGTGGGACCCATCGTCGAGCAGCCGGAGTACAACCTCTTCTCCAGGCACAAGgtgagctcggagtacatggttactcattcaatctccccaaaatctcgatttgtttaccgattcatgataatgcggcggcggcgccacctctctctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctctc