1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGAGCAAGAAACCTTCCCACATGATGCTTTGGAGGCTACTGCATGGACTGAAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgtttccaaatgttttgtaccaccccccgttcccattggatgttctccttggagttctggacctgtattatagtggctgctaactgtagctgttttcag
species | Zea mays |
transcript | GRMZM2G325131_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAACATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926357|gb|CF031169.1|CF031169
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926358|gb|CF031170.1|CF031170
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|40334289|gb|CK368359.1|CK368359
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211435759|gb|FL463295.1|FL463295
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AGATGGACTTATCATGGTTGCTCGCCACAAGAAGTACAAACACATCCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATEST: gi|32925173|gb|CF029985.1|CF029985
genomic: AGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACAT-CCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAAT
EST: TACAAACACATCCAG GGTGTCCAATTCCGCCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925121|gb|CF029933.1|CF029933
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|37377729|gb|CF625495.1|CF625495
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32924671|gb|CF029483.1|CF029483
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|78021212|gb|DV489599.1|DV489599
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|78113402|gb|DV531794.1|DV531794
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|33103571|gb|CF063531.1|CF063531
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: GTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926406|gb|CF031218.1|CF031218
genomic: GTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32942025|gb|CF046844.1|CF046844
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: GTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925654|gb|CF030466.1|CF030466
genomic: GTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925818|gb|CF030630.1|CF030630
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925314|gb|CF030126.1|CF030126
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|78105962|gb|DV524380.1|DV524380
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926489|gb|CF031301.1|CF031301
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCAAGAAACCTTCCCACATGATGCTTTGGAGGCTACTGCATGGACTGAAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgtttccaaatgttttgtaccaccccccgttcccattggatgttctccttggagttctggacctgtattatagtggctgctaactgtagctgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT