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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatttatattcataccaggtcgctagttttttaatggcctctgcttttgtccctcaaacatttatgacatgaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA

Basic information

species Zea mays
transcript GRMZM2G325131_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325131_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g38950.1 (Oryza sativa), 3'ss of exon 5
gtaacatttatattcataccaggtcgcta----gttttttaatggcctctgcttttgtccc-tcaaacatttatgacatg-aatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA
|| | | |||  ||||||   ||| || |    | ||||  ||| |||||||| |   |      || |  |    |||| || || |||||||||||||||||||||||||||| || |||||||| |||||||||||||||   |||||||||||  |||| ||||| ||||||||||||||||||||
gttagacttactttcatattgggttgcaataatggttttccatgacctctgctatcaacttactgaaaaggtggttcatgtaaaattcagGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021279|gb|AW066207.1|AW066207
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGNGCTCCTTCTGGAATGATGCATGGGAAAAGCTCTCCA
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCA
EST: gi|33099524|gb|CF059484.1|CF059484
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099031|gb|CF058991.1|CF058991
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33100076|gb|CF060036.1|CF060036
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099556|gb|CF059516.1|CF059516
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33100338|gb|CF060298.1|CF060298
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTAAAGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099441|gb|CF059401.1|CF059401
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: gi|33099508|gb|CF059468.1|CF059468
EST:     AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG                         GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttaatggcctctgcttttgtccctcaaacatttatgacatgaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGTTTATTACGATGAGGAATTAGGAAAGGCATTGTTCAATGGCTTGCCAAA
   ttttaat  putative branch site (score: 3)
                              aaacatttat  TA-rich tract