1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCCAACCATCCCAATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacatttatattcataccaggtcgctagttttttaatggcctctgcttttgtccctcaaacatttatgacatgaatatgcag
species | Zea mays |
transcript | GRMZM2G325131_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGNGCTCCTTCTGGAATGATGCATGGGAAAAGCTCTCCAEST: gi|33099524|gb|CF059484.1|CF059484
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCA
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGEST: gi|33099031|gb|CF058991.1|CF058991
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGEST: gi|33100076|gb|CF060036.1|CF060036
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGEST: gi|33099556|gb|CF059516.1|CF059516
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGEST: gi|33100338|gb|CF060298.1|CF060298
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTAAAGCATGGGAAAAGCTCTCCAGEST: gi|33099441|gb|CF059401.1|CF059401
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAGEST: gi|33099508|gb|CF059468.1|CF059468
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
EST: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAG GAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
genomic: AATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacattta ... gaatatgcagGAAAGATTATCCGTGCTCCTTCTGGAGTGATGCATGGGAAAAGCTCTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCCAACCATCCCAATTTTTGGAGTTTGCATGGGTCTGCAATGCATTGGAGAGGCATTTGGAGgtaacatttatattcataccaggtcgctagttttttaatggcctctgcttttgtccctcaaacatttatgacatgaatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG