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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcaccttactgagctaatataattgtctagttcaaattgttctaacctctctgatattggattccctggatgactgatttttttgtcattagggca...

Basic information

species Zea mays
transcript GRMZM2G324886_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324886_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55270.1 (Oryza sativa), 5'ss of exon 3
TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcaccttactgagctaatataattgtctagttcaaattgttctaac-ctctctgatattggattccctggatgactgatttttttgtcattagggca-
||||||||| |||||| | || || || || | | || |||| || |||| ||| | ||| ||||||||||||||||||||||| |||||||| || |||||| |   ||   |||  |   | |  | | || ||    |||||||||  | |  ||||  | | ||   || ||   |  |    |   ||  |  | | 
TGAGAAATGCAAGGTTTTAGTCAAGCCTACAAAGATTATTGTGACGCTTTACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtctagttgatatgcca-agctatttatttgtttttgttctaatgcacaatgattgttgctttaatgcatt-ttcttaacctgaacaccaaagaac

upper sequence: GRMZM2G324886_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G02270.1 (Glycine max), 5'ss of exon 3
TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcaccttactgagctaatataattgtctagttcaaattgttctaacctctctgatattggattccctggatgactgatttttttgtcattagggca-
 |||||||| ||||||||||| || || |  ||||   |  | ||  |  | |||| ||| ||||| |||||| |||| ||||||||||| |||||||||||| | ||  | |  || | | |      |||    |        | | |||   || || |        |  |  | | | |||| |||   |    || 
GGAGAAATGCAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACATTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagt-actatgcgaagattaaaatgacatctccccccccccccccaaccct---tgttaatcagcgtgataaagtagtaacttttgtgttggtgttacag

upper sequence: GRMZM2G324886_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G34530.1 (Glycine max), 5'ss of exon 3
TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcaccttactgagctaatataattgtctagttcaaattgttctaacctctctgatattggattccctggatgactgatttttttgtcattagggca-
 |||||||||||||||||||| || || |  ||||   |  | ||  |  | |||| ||| ||||| |||||| |||| ||||||||||| |||||||||||| |         | ||||| ||       ||  | | ||  || |     | | | || |  ||    |  |  | | |||||| |||   |    || 
AGAGAAATGTAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACGTTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagt------gtggtgctaagat------ttaaatgacatcctttt----ccccggttaatcaatgtgattaagtagtaatttttgtgttgatgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21432386|gb|BQ547876.1|BQ547876
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|110947916|gb|EE168073.1|EE168073
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211168821|gb|FL450568.1|FL450568
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211265894|gb|FL475742.1|FL475742
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|71297780|gb|DR784843.1|DR784843
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|111193385|gb|EE291521.1|EE291521
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|166435961|gb|EG078983.1|EG078983
EST:     CTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: CTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|9254427|gb|BE344895.1|BE344895
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|148986540|gb|EE030297.2|EE030297
EST:     TCAAGGGTTTTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|149071899|gb|EE160286.2|EE160286
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|32864798|gb|CF004480.1|CF004480
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGA
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGA
EST: gi|60394085|gb|DN226955.1|DN226955
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|37397713|gb|CF636164.1|CF636164
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|91871531|gb|EB401488.1|EB401488
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211430721|gb|FL358036.1|FL358036
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATT
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATT
EST: gi|5847273|gb|AW000352.1|AW000352
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|60356548|gb|DN223521.1|DN223521
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|148986541|gb|EE030298.2|EE030298
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|91872606|gb|EB402563.1|EB402563
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|6828099|gb|AW331742.1|AW331742
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|149105902|gb|EE291522.2|EE291522
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|149107865|gb|EE292225.2|EE292225
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211101846|gb|FL135638.1|FL135638
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211121330|gb|FL005530.1|FL005530
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAA
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAA
EST: gi|149071898|gb|EE160285.2|EE160285
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|148932418|gb|EC876110.2|EC876110
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|9731242|gb|BE509994.1|BE509994
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|5525553|gb|AI861446.1|AI861446
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|40337170|gb|CK371240.1|CK371240
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211122108|gb|FL005546.1|FL005546
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAG
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAG
EST: gi|60359174|gb|DN226147.1|DN226147
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211324693|gb|FL456196.1|FL456196
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|6828100|gb|AW331743.1|AW331743
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|7031246|gb|AW461134.1|AW461134
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211119756|gb|FL005495.1|FL005495
EST:     GCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: GCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211168822|gb|FL450569.1|FL450569
EST:     TCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211064088|gb|FL320247.1|FL320247
EST:     TCAAGGGTWCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|110194211|gb|EC876109.1|EC876109
EST:     TCAAGGGTTTTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|21432134|gb|BQ547624.1|BQ547624
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|71311759|gb|DR792324.1|DR792324
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|12968052|gb|BG264999.1|BG264999
EST:     TCAAGGGTTCT-AAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|60396099|gb|DN228968.1|DN228968
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGAC
EST: gi|211120548|gb|FL005517.1|FL005517
EST:     TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAG                         TTCAAGCCAAACATGGACAAGGGAAAAAGATCCGATGTCAGGAATTATGGA
genomic: TCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGG-AAAAAGATCCGATGTCAGGAATTATGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 319

TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGACTTAATGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 239

TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGACTTAATGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 270

TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGACTTAATGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 248

TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcacct ... tcattgacagTTCAAGCCAAACATGGACAAGGAAAAAGATCCGATGTCAGGAATTATGGACTTAATGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcaccttactgagctaatataattgtctagttcaaattgttctaacctctctgatattggattccctggatgactgatttttttgtcattagggca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA