Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attctgttagttaattcaccaagccaacatatatccaaagatgtcatgggtacgtattttgaaaatattttgatcttgacttgagtgtacccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT

Basic information

species Zea mays
transcript GRMZM2G324886_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324886_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g55270.1 (Oryza sativa), 3'ss of exon 2
attctgttagttaattcaccaagccaacatatatccaaagatgtcatgggtacgtattttgaaaatattttgatcttgacttgagtgtacccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT
||      |||| || |        ||   |   |    |   |     ||    | |||   |  |||  |||  | |  |   | |  |||||| ||||| ||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||||| |  ||||| |||| ||| || |||||||| || |||||||| |
atatgtaaagtttatgctgtttattaatcaaatcctgtggcatttgcatgtggagactttatgagcattgagataataatctagctttgtccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTAAGCCTATGTCAGTAGATACAAAATTCCATGATGTGAAGGGCAAGAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211435618|gb|FL005472.1|FL005472
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435614|gb|FL005468.1|FL005468
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435616|gb|FL005470.1|FL005470
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTTGAGCAAGAGAAGGTGGAGACTACTTT
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTT-GAGCAAGAGAAGGTGGAGACTACTTT
EST: gi|211373832|gb|FL271978.1|FL271978
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211371186|gb|FL271976.1|FL271976
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCWGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|71297780|gb|DR784843.1|DR784843
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438215|gb|FL005487.1|FL005487
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAKAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|111193385|gb|EE291521.1|EE291521
EST:     GGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: GGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120552|gb|FL005521.1|FL005521
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438212|gb|FL005484.1|FL005484
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122106|gb|FL005544.1|FL005544
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|9254427|gb|BE344895.1|BE344895
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|148986540|gb|EE030297.2|EE030297
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438221|gb|FL005493.1|FL005493
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122883|gb|FL005556.1|FL005556
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|149071899|gb|EE160286.2|EE160286
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435621|gb|FL005475.1|FL005475
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAKCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGTAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435620|gb|FL005474.1|FL005474
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGYTGAGCAAGAGAAGGYGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435625|gb|FL005479.1|FL005479
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119767|gb|FL005506.1|FL005506
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122115|gb|FL005553.1|FL005553
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122112|gb|FL005550.1|FL005550
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|32864798|gb|CF004480.1|CF004480
EST:     ACGTCACGCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGCTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120544|gb|FL005513.1|FL005513
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122110|gb|FL005548.1|FL005548
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|60394085|gb|DN226955.1|DN226955
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119762|gb|FL005501.1|FL005501
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121328|gb|FL005528.1|FL005528
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121329|gb|FL005529.1|FL005529
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119761|gb|FL005500.1|FL005500
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|37397713|gb|CF636164.1|CF636164
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120547|gb|FL005516.1|FL005516
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121336|gb|FL005536.1|FL005536
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119770|gb|FL005509.1|FL005509
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|91871531|gb|EB401488.1|EB401488
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121339|gb|FL005539.1|FL005539
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211430721|gb|FL358036.1|FL358036
EST:     ACGTCACGCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|5847273|gb|AW000352.1|AW000352
EST:     ACGTCACGCTTGGGTCGTTCAGCTGGGAGCAGGA-AACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120541|gb|FL005510.1|FL005510
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438210|gb|FL005482.1|FL005482
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|60356548|gb|DN223521.1|DN223521
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438218|gb|FL005490.1|FL005490
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|148986541|gb|EE030298.2|EE030298
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119769|gb|FL005508.1|FL005508
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|91872606|gb|EB402563.1|EB402563
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119764|gb|FL005503.1|FL005503
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGATAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122109|gb|FL005547.1|FL005547
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122116|gb|FL005554.1|FL005554
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|149105902|gb|EE291522.2|EE291522
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120555|gb|FL005524.1|FL005524
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120551|gb|FL005520.1|FL005520
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122111|gb|FL005549.1|FL005549
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438217|gb|FL005489.1|FL005489
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121338|gb|FL005538.1|FL005538
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|149107865|gb|EE292225.2|EE292225
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122113|gb|FL005551.1|FL005551
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211101846|gb|FL135638.1|FL135638
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121334|gb|FL005534.1|FL005534
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121330|gb|FL005530.1|FL005530
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119760|gb|FL005499.1|FL005499
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|149071898|gb|EE160285.2|EE160285
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|148932418|gb|EC876110.2|EC876110
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121325|gb|FL005525.1|FL005525
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438220|gb|FL005492.1|FL005492
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCMAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121331|gb|FL005531.1|FL005531
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211383322|gb|FL328263.1|FL328263
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121327|gb|FL005527.1|FL005527
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCMGGACAACSAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCMAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211380365|gb|FL318283.1|FL318283
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119757|gb|FL005496.1|FL005496
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGATCAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211438211|gb|FL005483.1|FL005483
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120546|gb|FL005515.1|FL005515
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120545|gb|FL005514.1|FL005514
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|40337170|gb|CK371240.1|CK371240
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122108|gb|FL005546.1|FL005546
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211205589|gb|FL329104.1|FL329104
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120549|gb|FL005518.1|FL005518
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119763|gb|FL005502.1|FL005502
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|60359174|gb|DN226147.1|DN226147
EST:     AGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: AGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211474902|gb|FL324943.1|FL324943
EST:     ACGTCACGCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121333|gb|FL005533.1|FL005533
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGAGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211121335|gb|FL005535.1|FL005535
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGATAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119766|gb|FL005505.1|FL005505
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119768|gb|FL005507.1|FL005507
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435622|gb|FL005476.1|FL005476
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|23357618|gb|BU645267.1|BU645267
EST:     ACGTCACTCTTGGGTCGCTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119765|gb|FL005504.1|FL005504
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|7031246|gb|AW461134.1|AW461134
EST:     ACGTCACGCTTGAGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGCTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211168822|gb|FL450569.1|FL450569
EST:     AGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: AGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435619|gb|FL005473.1|FL005473
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120543|gb|FL005512.1|FL005512
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|110194211|gb|EC876109.1|EC876109
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|21432134|gb|BQ547624.1|BQ547624
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|71311759|gb|DR792324.1|DR792324
EST:     CGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: CGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435623|gb|FL005477.1|FL005477
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTCTCCCTTGAGGGAGTTGAGCAAGASAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211119759|gb|FL005498.1|FL005498
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211435617|gb|FL005471.1|FL005471
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|60396099|gb|DN228968.1|DN228968
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211122107|gb|FL005545.1|FL005545
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|211120548|gb|FL005517.1|FL005517
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
EST: gi|149079143|gb|EE168074.2|EE168074
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGGAGGGAGTTTGAGCAAGAGAAGGTGGAGACTACTT
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTG-AGGGAGTT-GAGCAAGAGAAGGTGGAGACTACTT
EST: gi|211119758|gb|FL005497.1|FL005497
EST:     ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGG                         ATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC
genomic: ACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 382

GGCGGCTTCTGCGCCAGCGCCCGCGCCCGCTGCGCGTCCTGTTTTAAGCTACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 388

GGCGGCTTCTGCGCCAGCGCCCGCGCCCGCTGCGCGTCCTGTTTTAAGCTACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 322

GGCGGCTTCTGCGCCAGCGCCCGCGCCCGCTGCGCGTCCTGTTTTAAGCTACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 236

GGCGGCTTCTGCGCCAGCGCCCGCGCCCGCTGCGCGTCCTGTTTTAAGCTACGTCACTCTTGGGTCGTTCAGCTGGGAGCAGGACAACGAGAAGATTAGGgtacgttgtt ... ccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgggtacgtattttgaaaatattttgatcttgacttgagtgtacccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT
                            tcttgac  putative branch site (score: 236)
                                            cccatctcc  putative PPT
         tattttgaaaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attctgttagttaattcaccaagccaacatatatccaaagatgtcatgggtacgtattttgaaaatattttgatcttgacttgagtgtacccatctccagATATATGTTTCCCTTGAGGGAGTTGAGCAAGAGAAGGTGGAGACTACTTTCAAGCCAACATCAGTGGATATAAAGTTTCATGATGTCAAAGGCAAGAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
-ttctgtt
- - - - - - - ttcacca
- - - - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - -tgtcatg