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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag

Basic information

species Zea mays
transcript GRMZM2G176307_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 5'ss of exon 9
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagc-tgattcttacaaacatcttcacag
||||| |||||||||| || || ||||||||||| ||||||||| |||||||||||||||| ||| | || | ||||||  |||||||||||||  |||||||||| |  |||     | | |||  |   |   | ||||| || |  | | |     |    |  |   |   |     ||||| |  ||      ||| | |    ||    |  |   | | || | | ||||||| |||
GAATGGCTTTCCGTGTTCCCACAGTCGATGTTTCCGTTGTTGATCTGACTGTTAGGCTTGAGAAGCCCGCCAGCTATGACCAGATCAAGGCTGCAATCAAgtgagt-aattcttaacaactatgggctctgtaaatctttatgaacttctgatttctggaccgagaagaatctgcttgtgttttcagaaaagaaaattatttgctgccttgaatgtttcactaattttgcta-catcttctcag

upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA18G01330.1 (Glycine max), 5'ss of exon 9
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag
| ||||| ||||| ||||| || || |||||||| ||||||||  | ||||| ||||| || ||| |||||||||||||  | |||||  ||||  |||||| ||||       |    || || |  | ||    |||    |||| | | ||||       | || |  ||  |  | |   ||| |  |||||||| |  || ||                                   
GCATGTCCTTCCGAGTCCCCACTGTAGATGTTTCAGTTGTTGACCTCACTGTCAGGCTAGAGAAGCCAGCAACCTATGAGCAAATCAAATCTGCTATCAAgtaagtt------ttaaggttttgaaaatctttgcatttggcaaattgaatcatgt-------ttttttttccttttgacccaacaactctgtgttgaact--ttcag-----------------------------------

upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G06420.1 (Glycine max), 5'ss of exon 8
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtg----gagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag
||||||||||| | || ||||| || |||||||| || |||||| | |||||||| ||||| |||  ||| |  ||||||||||| || ||||| |||||||||||     ||||    |   |    | | |   | | || | || | |  ||||  || |||  |  | |    | || |    |||  | | |||    |   |||   |  ||| ||                         
GAATGTCTTTCAGAGTTCCAACTGTAGATGTTTCAGTGGTTGATCTCACTGTTAGACTTGAGAAGGGAGCCAGTTATGATGAGATTAAAGCTGCTGTCAAgtgagtataaactgttttttctagctaagggataaggatgttctgtttactttttaagatgtaat--tactataatgaatgaagtcctcatctca-tgtcc--tcaattttttttttcacag-------------------------

upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA11G37360.1 (Glycine max), 5'ss of exon 9
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag
||||||| ||||| ||||| || || |||||||| ||||||||  | ||||| ||||| || ||| |||||||||||||  | ||||| |||||  |||||| ||||   | ||   | || || |  | ||    |||    |||  | | ||||    |     |   ||||   ||||| |       ||||| || |  || ||                                   
GAATGTCCTTCCGAGTCCCCACTGTTGATGTTTCAGTTGTTGACCTAACTGTCAGGCTAGAGAAGCCAGCAACCTATGAGCAAATCAAAGCTGCTATCAAgtaagtt---tttgaacctttttgaaaatctttgcatttggcaaatcgaatcatgttttttccccgttgaccca--acaactcttt-----gtgttcaaat--ttcag-----------------------------------

upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT3G04120.1 (Arabidopsis thaliana), 5'ss of exon 8
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag
||||||||||||||||||||||||| ||||| || ||||||||  | ||||| || || || ||  | || ||||| ||||| |||||    ||  |||||| ||    || |   ||| ||     ||   ||||  |||| | |  | || ||  |||  ||      || ||||    |  ||        | |                                              
GAATGTCTTTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTACGATGAAATCAAAAAGGCTATCAAgtaag----cttttgagcaatgacagattaa-gtttacttat-attccagtagtgatcaa--attactcaccaagtgtttttaccaccaatacatag----------------------------------------------

upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT1G13440.1 (Arabidopsis thaliana), 5'ss of exon 9
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccag--tgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag
|||||||||||||||| |||||||| ||||| || ||||||||| | || ||||| ||||| ||  | ||||| || || || ||||||   ||  |||||||||     ||   | |  |   |   |     | |  |||||   | ||| || | | | |           |  |  ||||||  |                                                        
GAATGTCTTTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATACGACGAAATCAAGAAGGCCATCAAgtgagaaccatcaaggaccct-cagtcctaaccatatcatattaga-atttattgggtacttacaaaagattttggttaaaacttttcag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016457|gb|CO445206.1|CO445206
EST:     GGTAGGCTTGAGAAGTCANCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGGCCGAG-CANAAGGTANNCCTCA-GGGCATCCTGGGTTACGTTGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGG-CCGAGGCAGAAGGTAG-CCTCAAGGGCATCCTGGGTTACGTTGA
EST: gi|32908896|gb|CF013709.1|CF013709
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32937849|gb|CF042668.1|CF042668
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|47962547|gb|CN845256.1|CN845256
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         NGCCGAGGCAAAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32836447|gb|CD976125.1|CD976125
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGATGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32934253|gb|CF039065.1|CF039065
EST:     GCTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|12968796|gb|BG265832.1|BG265832
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32922424|gb|CF027236.1|CF027236
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67016420|gb|CO445169.1|CO445169
EST:     GTTAGGCTTGAGAAGTCANCACCCTATGATGAGATCAAGGCTGCCGTCAA                         GGCCGAG-CANAAGGTA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTA
EST: gi|32933572|gb|CF038384.1|CF038384
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|60338041|gb|DN205014.1|DN205014
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32944651|gb|CF049470.1|CF049470
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|17931468|gb|BM268428.1|BM268428
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|211279252|gb|FL309947.1|FL309947
EST:     AGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: AGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|58029741|gb|CX725168.1|CX725168
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|211460618|gb|FL464778.1|FL464778
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32847840|gb|CD987521.1|CD987521
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|211234755|gb|FL093180.1|FL093180
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|12970421|gb|BG266975.1|BG266975
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32839439|gb|CD979120.1|CD979120
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGATGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|31351309|gb|CD435666.1|CD435666
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGG-TTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32936235|gb|CF041047.1|CF041047
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32867841|gb|CF007523.1|CF007523
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67016339|gb|CO445088.1|CO445088
EST:     TTAGGCTTGAGAAGTCAGCAACCTATGATGAGATNCAAG-CTGCGGTCAA                         GGCCCGAG-CAAAAGGTAGCCTCA-GGGCATCCTGNGTTACGTTGAGGAGG
genomic: TTAGGCTTGAAAAGTCAGCAACCTATGATGAGAT-CAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCC-GAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGG
EST: gi|33942538|gb|CF349138.1|CF349138
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|211230632|gb|FL093153.1|FL093153
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32933938|gb|CF038750.1|CF038750
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67025646|gb|CO454395.1|CO454395
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGNGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67023017|gb|CO451766.1|CO451766
EST:     TTAGGCTTGAGAAAGTCAGCA-CCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGANGCANAAGGTAGCCTCAAGGGCATCCTGNGTTTACGT-GAGGANG
genomic: TTAGGCTTGA-AAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTT-ACGTTGAGGAGG
EST: gi|32866668|gb|CF006350.1|CF006350
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67024498|gb|CO453247.1|CO453247
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCANAAGGTAGCCTCAAGGGCATCCTGNGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32934982|gb|CF039794.1|CF039794
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|31350563|gb|CD434920.1|CD434920
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32920419|gb|CF025231.1|CF025231
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32934331|gb|CF039143.1|CF039143
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCCATCCTGGGTTACGTTGAGGAGG
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGC-ATCCTGGGTTACGTTGAGGAGG
EST: gi|32937088|gb|CF041907.1|CF041907
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATAAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|76290524|gb|DV030092.1|DV030092
EST:     AAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: AAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32945386|gb|CF050205.1|CF050205
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|33093805|gb|CF053799.1|CF053799
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|31364648|gb|CD449003.1|CD449003
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|211224443|gb|FL093111.1|FL093111
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67019400|gb|CO448149.1|CO448149
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGNGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|60399498|gb|DN232310.1|DN232310
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|60344263|gb|DN211236.1|DN211236
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32839098|gb|CD978779.1|CD978779
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTATCCTCAAGGGCATACTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32836865|gb|CD976543.1|CD976543
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67014228|gb|CO442977.1|CO442977
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAANGGTAGCCTCA-GGGCATCCTGNGTTACGTTGAGGAGG
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAA-GGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGG
EST: gi|211226512|gb|FL093128.1|FL093128
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|31361553|gb|CD445910.1|CD445910
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32931941|gb|CF036753.1|CF036753
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32838295|gb|CD977973.1|CD977973
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|14204225|gb|BG837902.1|BG837902
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32838783|gb|CD978464.1|CD978464
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67016195|gb|CO444944.1|CO444944
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCANAAAGTANCCTCAAGG-CATCCTGNGTTACGTTNGAGAAG-
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTT-GAGGAGG
EST: gi|67038573|gb|CO464885.1|CO464885
EST:     GTTAGGCTTGAGAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|18164650|gb|BM334489.1|BM334489
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|32836504|gb|CD976182.1|CD976182
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGATGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|211204561|gb|FL401743.1|FL401743
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
EST: gi|67015233|gb|CO443982.1|CO443982
EST:     TTAGGCTTGAGAAGTCAGCA-CCTATGATGAGATCAAG-CTGTCG-TCAA                         GCCCGAG-CANAAGGTA
genomic: TTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTG-CGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTA
EST: gi|211340819|gb|FL255963.1|FL255963
EST:     GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAA                         GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA
genomic: GTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagc ... atcttcacagGGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGTCTTTCCGTGTCCCAACCGTCGATGTTTCTGTTGTTGATTTGACTGTTAGGCTTGAAAAGTCAGCAACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctgtggcattgtggagttgttgtttttttattaattaattaatgtgcaataatgttgtgcccagtgcaactttcaaatgagtgttgaattggtttagatggtcatagctgattcttacaaacatcttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA