1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggctagttgccttcaccgattatctgactctgaccaggaggagggcttctgcgcacttcaaaatttaatttctatgtctcttttcag
species | Zea mays |
transcript | GRMZM2G176307_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|17931468|gb|BM268428.1|BM268428
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|211279252|gb|FL309947.1|FL309947
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|58029741|gb|CX725168.1|CX725168
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|211460618|gb|FL464778.1|FL464778
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|31351309|gb|CD435666.1|CD435666
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCEST: gi|32867841|gb|CF007523.1|CF007523
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCC
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|33942538|gb|CF349138.1|CF349138
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATTAEST: gi|211230632|gb|FL093153.1|FL093153
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATEST: gi|67025646|gb|CO454395.1|CO454395
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGAT
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGGACAGCACCAACTAAGATTAEST: gi|67024498|gb|CO453247.1|CO453247
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GCA-CTTCGTGAAGCTCGTGTCCTGGTACGANCA-CGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGEST: gi|31350563|gb|CD434920.1|CD434920
genomic: -CAACTTCGTGAAGCTCGTGTCCTGGTACGA-CAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCG
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|149051838|gb|EE155965.2|EE155965
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|76290524|gb|DV030092.1|DV030092
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|31364648|gb|CD449003.1|CD449003
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCEST: gi|211224443|gb|FL093111.1|FL093111
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGC
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGAEST: gi|67019400|gb|CO448149.1|CO448149
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATTAEST: gi|60399498|gb|DN232310.1|DN232310
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|149073974|gb|EE162302.2|EE162302
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAATTAAGATGAEST: gi|60344263|gb|DN211236.1|DN211236
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|67014228|gb|CO442977.1|CO442977
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GCA-CTTCGTGAAGCTCGTGTCCTGGTACCGACA-CGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGEST: gi|31361553|gb|CD445910.1|CD445910
genomic: -CAACTTCGTGAAGCTCGTGTCCTGGTAC-GACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCG
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|113575969|gb|DW750006.1|DW750006
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: CAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|148963090|gb|EE014049.2|EE014049
genomic: CAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|14204225|gb|BG837902.1|BG837902
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATTAEST: gi|67038573|gb|CO464885.1|CO464885
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTNGGGATACAG CACCCGCGTGGTCGACCTGATCCCGC-ACATGAACAGCACCAACTAAGAATEST: gi|18164650|gb|BM334489.1|BM334489
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCC-GCCACATGAACAGCACCAACTAAGA-T
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGAEST: gi|211204561|gb|FL401743.1|FL401743
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGYACCAACTAAKATGAEST: gi|211340819|gb|FL255963.1|FL255963
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
EST: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG CACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
genomic: GGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggc ... ctcttttcagCACCCGCGTGGTCGACCTGATCCGCCACATGAACAGCACCAACTAAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggctagttgccttcaccgattatctgactctgaccaggaggagggcttctgcgcacttcaaaatttaatttctatgtctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC