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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctatacattccctaccactagccattttctgatcagtagttaatcgctaggggcctcaggttactgacacttttattttttctgattgtctctctcaatcacag

Basic information

species Zea mays
transcript GRMZM2G176307_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176307_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 5'ss of exon 10
GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgct-atacattccctaccactagccattttctgatca-gtagttaatcgctaggggcctcaggttactgacacttttattttttctga---ttgtctctctcaatcacag
||  ||||| || || |  |||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||    | |  |||| |       |    | ||   | |||  | | | | | |||||   |||  | ||      || ||| |||  |  |    ||    | || |||||||
GGAGGAGGCTGAGGGCAAGCTCAAGGGCATCCTTGGATACGTTGAGGAGGACCTTGTTTCCACTGACTTCCAGGGTGACAGCAGgtaaatttacccattgcagtttcttgtataattatgggtcatattggttacctctagg---ctcttgctatccgacctattaatttaccaaaaaaatgcacttatccatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908896|gb|CF013709.1|CF013709
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTA
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTA
EST: gi|32937849|gb|CF042668.1|CF042668
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATG
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATG
EST: gi|47962547|gb|CN845256.1|CN845256
EST:     TTACGTTGAGGAGGACCTTGTTTCCCCCGATTTCCAGGGGTGACAACCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAA
genomic: TTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGG-TGACAGC-AGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAA
EST: gi|32836447|gb|CD976125.1|CD976125
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32934253|gb|CF039065.1|CF039065
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|12968796|gb|BG265832.1|BG265832
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32922424|gb|CF027236.1|CF027236
EST:     GGTTACGTTGAGGAGGACCTTGTTTACAACGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32933572|gb|CF038384.1|CF038384
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|60338041|gb|DN205014.1|DN205014
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32944651|gb|CF049470.1|CF049470
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|17931468|gb|BM268428.1|BM268428
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|211279252|gb|FL309947.1|FL309947
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|58029741|gb|CX725168.1|CX725168
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|211460618|gb|FL464778.1|FL464778
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32847840|gb|CD987521.1|CD987521
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAAC
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAAC
EST: gi|211234755|gb|FL093180.1|FL093180
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|12970421|gb|BG266975.1|BG266975
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGGACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32839439|gb|CD979120.1|CD979120
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|31351309|gb|CD435666.1|CD435666
EST:     G-TTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAAGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32936235|gb|CF041047.1|CF041047
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|166686520|gb|EG267945.1|EG267945
EST:     GGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32867841|gb|CF007523.1|CF007523
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|67016339|gb|CO445088.1|CO445088
EST:     NGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGNCTTGNNACGGCA-CTTCG
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGA-ACGGCAACTTCG
EST: gi|33942538|gb|CF349138.1|CF349138
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|211230632|gb|FL093153.1|FL093153
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATS-TAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32933938|gb|CF038750.1|CF038750
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAATGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|67025646|gb|CO454395.1|CO454395
EST:     NGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|67023017|gb|CO451766.1|CO451766
EST:     GTTTACGT-GAGGANGACCTTGTTTNCACCGATTTCCANGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTTGA-CGGCAACTTCG
genomic: GTT-ACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTT-GAACGGCAACTTCG
EST: gi|32866668|gb|CF006350.1|CF006350
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATG
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATG
EST: gi|67024498|gb|CO453247.1|CO453247
EST:     NGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGGCA-CTTCG
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGG-CAACTTCG
EST: gi|32934982|gb|CF039794.1|CF039794
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|31350563|gb|CD434920.1|CD434920
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|149051838|gb|EE155965.2|EE155965
EST:     GTTACG-TGAGGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGA-GGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32920419|gb|CF025231.1|CF025231
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|113676181|gb|DW831946.1|DW831946
EST:     GTTACGTTAGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCC
genomic: GTTACGTT-GAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCC
EST: gi|32934331|gb|CF039143.1|CF039143
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32937088|gb|CF041907.1|CF041907
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|76290524|gb|DV030092.1|DV030092
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32945386|gb|CF050205.1|CF050205
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|33093805|gb|CF053799.1|CF053799
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|31364648|gb|CD449003.1|CD449003
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|113841102|gb|DW966611.1|DW966611
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGTAG                         GTTTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTC
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTC
EST: gi|211224443|gb|FL093111.1|FL093111
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|67019400|gb|CO448149.1|CO448149
EST:     NGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|60399498|gb|DN232310.1|DN232310
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|60344263|gb|DN211236.1|DN211236
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32839098|gb|CD978779.1|CD978779
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCATGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGA
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32836865|gb|CD976543.1|CD976543
EST:     GTTACGTTGAGGAGGACCTTGTTTCCACCGATTNTC-ATGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAANGCTGNCATTGCCTTGAAACGGCA-CTTCG
genomic: GTTACGTTGAGGAGGACCTTGTTTCCACCGATT-TCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAA-CGGCAACTTCG
EST: gi|67014228|gb|CO442977.1|CO442977
EST:     NGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTTGA-CGGGCA-CTTC
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTT-GAACGG-CAACTTC
EST: gi|211226512|gb|FL093128.1|FL093128
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAARGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|31361553|gb|CD445910.1|CD445910
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32931941|gb|CF036753.1|CF036753
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32838295|gb|CD977973.1|CD977973
EST:     GTTACGTTGAGGAGGACCTTGGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GTTACGTTGAGGAGGACCTTG-TTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|14204225|gb|BG837902.1|BG837902
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32838783|gb|CD978464.1|CD978464
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|67016195|gb|CO444944.1|CO444944
EST:     GTTACGTTNGAGAAG-ACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGNCTTG
genomic: GTTACGTT-GAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTG
EST: gi|67038573|gb|CO464885.1|CO464885
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|18164650|gb|BM334489.1|BM334489
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|32836504|gb|CD976182.1|CD976182
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|211204561|gb|FL401743.1|FL401743
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
EST: gi|211340819|gb|FL255963.1|FL255963
EST:     GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAG                         GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT
genomic: GGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctata ... tcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCGAGGCAGAAGGTAGCCTCAAGGGCATCCTGGGTTACGTTGAGGAGGACCTTGTTTCCACCGATTTCCAGGGTGACAGCAGgtgtgctatacattccctaccactagccattttctgatcagtagttaatcgctaggggcctcaggttactgacacttttattttttctgattgtctctctcaatcacag

- - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - -  GGAGGA