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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCCCAGCATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactcttacgctcatgtttttttcgtgttctgtcatggcaaagtgtagttatagttaccactgacttttgaacgcacaattatgaagcactcatataa...

Basic information

species Zea mays
transcript GRMZM2G176175_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176175_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g13170.2 (Oryza sativa), 5'ss of exon 9
---GGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCCCAGCATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactcttacgctcatgtttttttcgtgttctgtcatggca---aagtgtagttatagttaccactgacttttgaacgcacaatta-tgaagcactcatataa
     | || ||||||||||| | ||||||  ||| |||||||    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||  |||  |  |||    || |  |   | ||  | | ||   ||   |  ||  ||||| || |   ||   ||    | | || |      ||| ||   
AATAAGTCCTCAGTGGCCTGTGCTTCCTCAGGGCACATCGATGT---CCCAGCATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCAGGgtatatctatca-tcaaaacttatatgcaatttgaaaagacagttaaacttgtttcaagttaacattcgattgctaattagctactacttccatgctccta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30705179|gb|CD058684.1|CD058684
EST:     TCCACATCTGTATGCATCTCCTTGTCCAGTCTTCTTTGTG-CCCTCAGG                         GAGGCGCCTATGCAGGAAGAGGAGACCCGGTCCGAGCCGGCGTGTCCCCAG
genomic: TCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactctta ... gcaactgcagGAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
EST: gi|149088443|gb|EE177546.2|EE177546
EST:     ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGG                         GAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
genomic: ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactctta ... gcaactgcagGAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
EST: gi|110223465|gb|EC905363.1|EC905363
EST:     ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGG                         GAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
genomic: ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactctta ... gcaactgcagGAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
EST: gi|30705182|gb|CD058685.1|CD058685
EST:     ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGG                         GAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
genomic: ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactctta ... gcaactgcagGAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
EST: gi|29543664|gb|CB604044.1|CB604044
EST:     ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGG                         GAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG
genomic: ATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGgtaactctta ... gcaactgcagGAGGCGCCTATGCAGGAAGAGGAGAACCGGTCCGAGCCGGCGTGTCCCCAG