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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatataatacaactttatgtgtacagcttgaagagttctgatagcaatttggcacctttatcacgtgatgcacgcctaagccagaaaattccaagttggaaagctcagtttatttggttcaaattgtgctaggcgaggtggtattgaactcactggatcttttttttatttatttggtgttgtagCCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCCCAGCATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACC

Basic information

species Zea mays
transcript GRMZM2G176175_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176175_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g13170.2 (Oryza sativa), 3'ss of exon 8
gtaaatataatacaactttatgtgtacagcttgaagagttctgatagcaatttggcacctttatcacgtgatgcacgcctaagccagaa-aattccaa-gttggaaagctcagtttatttggttcaaattgtgctaggcgaggtggtattgaactcactggatcttttttttatttatttggtgttgtagCCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCCCAGCATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACC---
                                                                       |       ||| | | || | |||||| |    |||||||  ||   ||| |||  ||   | ||   |||||                 ||| |||| | |||  |||     ||||||||||  | || ||||||||||| | ||||||  ||| |||||||    |||||||||||||| | ||||||||||||||||| ||||||||||||||||   
---------------------------------------------------------------------tgtatttttataacctataacagttccaaagccacaaagctcttttaccttgattctgataacgttaactgaggt-----------------atcattttgtgattgtttt----ctgtagCCAATAAGTCCTCAGTGGCCTGTGCTTCCTCAGGGCACATCGATGT---CCCAGCATCCACATTTATATGCATCTCCTTGTCCGGGCTTCTTTGTGAACCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149088443|gb|EE177546.2|EE177546
EST:     TTGGATTAAGTTGTAATTCTCCTGAAGCTTCAAGCTCCATTGTTTCTCAG                         CCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCC
genomic: TTGGATTAAGTTGTAATTCTCCTGAAGCTTCAAGCTCCATTGTTTCTCAGgtaaatataa ... ggtgttgtagCCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCC
EST: gi|30705182|gb|CD058685.1|CD058685
EST:     TTGGATTAAGTTGTAATTCTCCTGAAGCTTCAAGCTCCATTGTTTCTCAG                         CCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCC
genomic: TTGGATTAAGTTGTAATTCTCCTGAAGCTTCAAGCTCCATTGTTTCTCAGgtaaatataa ... ggtgttgtagCCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCC
EST: gi|29543664|gb|CB604044.1|CB604044
EST:     TTGGATTAAGTTGTAATTCTCCTGAAGCTTCAAGCTCCATTGTTTCTCAG                         CCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCC
genomic: TTGGATTAAGTTGTAATTCTCCTGAAGCTTCAAGCTCCATTGTTTCTCAGgtaaatataa ... ggtgttgtagCCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcgaggtggtattgaactcactggatcttttttttatttatttggtgttgtagCCAATGGGCCCCCAGTGGCCTGTCCATCCTCACAGCAGATCGATGCGGCCCCAGCATCCACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACC
                aactcac  putative branch site (score: 2)
                       tggatcttttttttat  TA-rich tract