1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacaattggactattgtacttagttttgcatggcgtccattagacgatcctctacaatctcactgggattaattgttcttagCAGTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTAACGTGCATGATCTCAGAAGTGATGGTACCCTGACTGGTTTTGGATTAAG
species | Zea mays |
transcript | GRMZM2G176175_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCCTATGATGGAGATGTCCCACTTCCACCTGCAATTGAGAAAGAT- --GTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTAEST: gi|29543664|gb|CB604044.1|CB604044
genomic: TGTTTCCTATGATGGAGATGTCCCACTTCCACCTGCAATTGAGAAAGATGgtacaattgg ... ttgttcttagCAGTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTA
EST: TGTTTCCTATGATGGAGATGTCCCACTTCCACCTGCAATTGAGAAAGAT- --GTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTA
genomic: TGTTTCCTATGATGGAGATGTCCCACTTCCACCTGCAATTGAGAAAGATGgtacaattgg ... ttgttcttagCAGTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTA
gcatggcgtccattagacgatcctctacaatctcactgggattaattgttcttagCAGTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTAACGTGCATGATCTCAGAAGTGATGGTACCCTGACTGGTTTTGGATTAAG
gattaat putative branch site (score: 2)
ttgttctt CT-rich tract
attaattgttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaattggactattgtacttagttttgcatggcgtccattagacgatcctctacaatctcactgggattaattgttcttagCAGTGGTTGATGGAGACATCCTTGATCTGAATTTGAGGATTTCACAACCTAACGTGCATGATCTCAGAAGTGATGGTACCCTGACTGGTTTTGGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT