1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGCCACTGCCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctgatttatattatctagagaagttatgtttatgtggatcctgtcacctccattctgtaaatctactggttagagatgctgtaatgttttgtaggcctcactgtttgtcatttgttggtcttgcttctctttgcaag
species | Zea mays |
transcript | GRMZM2G173354_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCCAAGTACCTGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCTGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCTCCTTTCCCEST: gi|148986479|gb|EE030223.2|EE030223
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCNNNNNNNCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|94475660|gb|EB704618.1|EB704618
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|71306414|gb|DR789352.1|DR789352
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|211097823|gb|FL296747.1|FL296747
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCTGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|101390441|gb|EB817155.1|EB817155
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTTGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|30306849|gb|CD001522.1|CD001522
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|5761988|gb|AI967036.1|AI967036
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|71762381|gb|DR960318.1|DR960318
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|78090335|gb|DV518709.1|DV518709
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|86467750|gb|DY234120.1|DY234120
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|6022043|gb|AW066986.1|AW066986
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|166659003|gb|EG171721.1|EG171721
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|78078858|gb|DV507270.1|DV507270
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTTGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|26557637|gb|CA829872.1|CA829872
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|76010764|gb|DT937934.1|DT937934
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|95107853|gb|EB740082.1|EB740082
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|60340433|gb|DN207406.1|DN207406
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCTGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|71427864|gb|DR808914.1|DR808914
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|5740558|gb|AI948248.1|AI948248
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|67023051|gb|CO451800.1|CO451800
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCTGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCCEST: gi|211097821|gb|FL296745.1|FL296745
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCTGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCTCCTTTCCCEST: gi|76911327|gb|DV164233.1|DV164233
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
EST: CCCCAAGTACCAGGATCTGTGGAGGGCNNNNNNNCGTTTGTGCCGGGCAA GTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
genomic: CCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctg ... tctttgcaagGTTGAGCCGACCTGAAGGGAAGCCGTTCGAAGTCATGGTGGCGCCTTTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGCCACTGCCCCAAGTACCAGGATCTGTGGAGGGCTCTTTTTCGTTTGTGCCGGGCAAgtatgttctgatttatattatctagagaagttatgtttatgtggatcctgtcacctccattctgtaaatctactggttagagatgctgtaatgttttgtaggcctcactgtttgtcatttgttggtcttgcttctctttgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG