1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGCATGATCAAGACCCGTATGCTGATGGCATCGAGATATATCAGCTTATATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattcttcacttcatagacagttatctagtcatttagttgcacgtgtcataactttctccatttcctacacagtcatctagtcattcagtagtac...
species | Zea mays |
transcript | GRMZM2G173354_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|148986479|gb|EE030223.2|EE030223
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|94475660|gb|EB704618.1|EB704618
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|101390441|gb|EB817155.1|EB817155
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|30306849|gb|CD001522.1|CD001522
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|71762381|gb|DR960318.1|DR960318
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|78090335|gb|DV518709.1|DV518709
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|86467750|gb|DY234120.1|DY234120
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|78078858|gb|DV507270.1|DV507270
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|211097822|gb|FL296746.1|FL296746
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|26557637|gb|CA829872.1|CA829872
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|76010764|gb|DT937934.1|DT937934
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|60340433|gb|DN207406.1|DN207406
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|71427864|gb|DR808914.1|DR808914
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|211097821|gb|FL296745.1|FL296745
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: TCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAAEST: gi|76911327|gb|DV164233.1|DV164233
genomic: TCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
EST: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAG GTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
genomic: ATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattc ... ataccaatagGTACGCTCATCTGCTGTCTTTGTGCCAGAACATCCTGGGAGGCCTGGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCATGATCAAGACCCGTATGCTGATGGCATCGAGATATATCAGCTTATATCCAGAAGCACCTCCATCATGCAGTTCAGCTGTTACAAATGGCATTAAGgtggtaattcttcacttcatagacagttatctagtcatttagttgcacgtgtcataactttctccatttcctacacagtcatctagtcattcagtagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT