1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTGTACTATTCTTCCTGCCAGCTTTGCTCCCGCCACTGGACCATCAGATCGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggggaggaacagaactagttttttttttcccgttactgactacagtttcctttgaaaggtgattaggtaatgtgcctgatcaacatatctcgtgcag
species | Zea mays |
transcript | GRMZM2G173354_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGCGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|148986479|gb|EE030223.2|EE030223
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTTTACTGTTACCTGGTGAGGATGAGTTTGTTTACGAGAGTTGCACGEST: gi|94475660|gb|EB704618.1|EB704618
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTTTACGAGAGTTGCACGEST: gi|71306414|gb|DR789352.1|DR789352
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|211097823|gb|FL296747.1|FL296747
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|101390441|gb|EB817155.1|EB817155
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTTTACGAGAGTTGCACGEST: gi|30306849|gb|CD001522.1|CD001522
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|33100086|gb|CF060046.1|CF060046
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAC TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|5761988|gb|AI967036.1|AI967036
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|71762381|gb|DR960318.1|DR960318
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|78090335|gb|DV518709.1|DV518709
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|86467750|gb|DY234120.1|DY234120
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTTTACGAGAGTTGCACGEST: gi|6022043|gb|AW066986.1|AW066986
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGCCAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCCCGEST: gi|78078858|gb|DV507270.1|DV507270
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTTTACTGTTACCTGGTGAGGATGAGTTTGTTTTCGAGAGTTGCACGEST: gi|26557637|gb|CA829872.1|CA829872
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|76010764|gb|DT937934.1|DT937934
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|95107853|gb|EB740082.1|EB740082
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|60340433|gb|DN207406.1|DN207406
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|71427864|gb|DR808914.1|DR808914
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTTTACGAGAGTTGCACGEST: gi|5740558|gb|AI948248.1|AI948248
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|67023051|gb|CO451800.1|CO451800
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACGEST: gi|211097821|gb|FL296745.1|FL296745
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
EST: TGTGACAGGGTTGTTTCTGATGTGAGCGGAGGNAGGGGTTANTTGGAGAG TATCCTCTACTGTTACCTGGCGAGGATGAGTTTGTCTACGAGAGTTGCACEST: gi|76911327|gb|DV164233.1|DV164233
genomic: TGTGACAGGGTTGTTTCTGATGTGAGCGGAGG-AGGGGTTA-TTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCAC
EST: CGTGTGACAGGGTTGTTTTTGATGTGAGCGGAGGAGGGGTTATTGGAGAG TATCCTTTACTGTTACCTGGTGAGGATGAGTTTGTTTACGAGAGTTGCACG
genomic: CGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggg ... tctcgtgcagTATCCTCTACTGTTACCTGGTGAGGATGAGTTTGTCTACGAGAGTTGCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGTACTATTCTTCCTGCCAGCTTTGCTCCCGCCACTGGACCATCAGATCGTGTGACAGGGTTGTTTCTGATGTGAGCGGAGGAGGGGTTATTGGAGAGgtatcctggggaggaacagaactagttttttttttcccgttactgactacagtttcctttgaaaggtgattaggtaatgtgcctgatcaacatatctcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA