1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaacaagacactttattaaaaactaagcaatatattaaatattcccacgcatgtgtgcgttgctctaatttaatttggcactctcgatcttcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTACAACGACACCAACATCGACGGCGCCTTCGCGAGAGCAAGGCGATCGGT
species | Zea mays |
transcript | GRMZM2G171078_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCG GAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTEST: gi|148940420|gb|EC885215.2|EC885215
genomic: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCGgtgcgtgatg ... tcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGT
EST: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCG GAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTEST: gi|18659508|gb|BM500375.1|BM500375
genomic: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCGgtgcgtgatg ... tcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGT
EST: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCGCTCTCCG GAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTEST: gi|110531083|gb|EE035267.1|EE035267
genomic: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCGgtgcgtgatg ... tcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGT
EST: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCG GAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTEST: gi|148941023|gb|EC885877.2|EC885877
genomic: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCGgtgcgtgatg ... tcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGT
EST: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCG GAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGT
genomic: CCTCTTCGCCGCGCAGGGTCTCTCCCAGAAAGACATGGTTGCACTCTCCGgtgcgtgatg ... tcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGT
cacgcatgtgtgcgttgctctaatttaatttggcactctcgatcttcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTACAACGACACCAACATCGACGGCGCCTTCGCGAGAGCAAGGCGATCGGT
ctctcgatcttcttct CT-rich tract
tctaatttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaagacactttattaaaaactaagcaatatattaaatattcccacgcatgtgtgcgttgctctaatttaatttggcactctcgatcttcttctgcagGAGCTCACACCATCGGCCAAGCACGCTGCACCAACTTCAGAGCGCACGTGTACAACGACACCAACATCGACGGCGCCTTCGCGAGAGCAAGGCGATCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-aacaaga
- - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgctc