1 5' 3' | 2 5' 3' | 3 5' 3' |
gtccaggcacgtatatatattaacggtctccaccattatatatatatattagttgcttaacatgtatgtaatgacgatcatgcatgttatcatgtgtatgtaatgcagGGCTGCGACGCGTCGTTGCTGCTGGACGACACGCCCAGCTTCCAGGGCGAGAAGATGGCCAAGCCTAACAACGGCTCCGTCAGAGGCTTCGAGGTCATCG
species | Zea mays |
transcript | GRMZM2G171078_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148996016|gb|EE035268.2|EE035268
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148996016|gb|EE035268.2|EE035268
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148940420|gb|EC885215.2|EC885215
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148940420|gb|EC885215.2|EC885215
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148940420|gb|EC885215.2|EC885215
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148941023|gb|EC885877.2|EC885877
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148941023|gb|EC885877.2|EC885877
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCEST: gi|148941023|gb|EC885877.2|EC885877
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
tgcttaacatgtatgtaatgacgatcatgcatgttatcatgtgtatgtaatgcagGGCTGCGACGCGTCGTTGCTGCTGGACGACACGCCCAGCTTCCAGGGCGAGAAGATGGCCAAGCCTAACAACGGCTCCGTCAGAGGCTTCGAGGTCATCG
gcttaac putative branch site (score: 3)
tatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccaggcacgtatatatattaacggtctccaccattatatatatatattagttgcttaacatgtatgtaatgacgatcatgcatgttatcatgtgtatgtaatgcagGGCTGCGACGCGTCGTTGCTGCTGGACGACACGCCCAGCTTCCAGGGCGAGAAGATGGCCAAGCCTAACAACGGCTCCGTCAGAGGCTTCGAGGTCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG