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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGTGCACGACGCCGTCAGGTCGGTGCTGCAGGCCGCCATCGCCAGGGAGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCgtccaggcacgtatatatattaacggtctccaccattatatatatatattagttgcttaacatgtatgtaatgacgatcatgcatgttatcatgtgtatgtaatgcag

Basic information

species Zea mays
transcript GRMZM2G171078_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171078_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g02080.2 (Oryza sativa), 5'ss of exon 1
CGGCGTGCACGACGCCGTCAGGTCGGTGCTGCAGGCCGCCATCGCCAGGGAGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCgtccaggcacgtatatatattaacggtctccaccattatatatatatattagttgcttaacatg-tatgtaatgacgatcatgcatgttatcatgtgtatgtaatgcag
      |  | |||| || | |  || | ||||| | ||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| | |   ||   | |     ||    || | ||||   |   |    ||| |   |||| ||| |||| |      |||||||    |||              
------GTTCAACGCGGTGAAGCGGGGGATGCAGTCGGCCATCGCCAGGGAGAAGCGCATCGGCGCCTCCATCGTCCGCCTCTTCTTCCACGACTGCTTCGTCCAAgtaaccatcc-tctacctagt----acaagtatacgcacgcacacattgat---catgctatataatta-atctgtgcatgtatgaatgccag----------

upper sequence: GRMZM2G171078_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g02130.1 (Oryza sativa), 5'ss of exon 1
CGGCGTGCACGACGCCGTCAGGTCGGTGCTGCAGGCCGCCATCGCCAGGGAGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCgtccaggcacgtatatatattaacggtctccaccattatatatatatattagttgcttaacatgtatgtaatgac-gatc-atgcatgttatcatgtgtatgtaatgcag
      |  |||||| |||| ||  | | ||||| ||||||||||||  ||| |||| || || ||||||||| ||||||||||||||||||||||||||||||| | |  | | |  |  | || ||      || ||   ||  | || |  ||| | |||   || |  ||| |||| |||    | | || |||||          
------GTTCGACGCAGTCAAGTGCGGGATGCAGTCCGCCATCGCCAATGAGAAGCGTATCGGCGCCTCCATCGTCCGCCTCTTCTTCCACGACTGCTTCGTCCAAgtaactgtttg-accatcgatcg-----atcatg-gtacgtgttgg--gctaaccattcttgcagcgactgatcgatgaccataagcacgtgtag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148996016|gb|EE035268.2|EE035268
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148996016|gb|EE035268.2|EE035268
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148996016|gb|EE035268.2|EE035268
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148940420|gb|EC885215.2|EC885215
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148940420|gb|EC885215.2|EC885215
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148940420|gb|EC885215.2|EC885215
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148941023|gb|EC885877.2|EC885877
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148941023|gb|EC885877.2|EC885877
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg
EST: gi|148941023|gb|EC885877.2|EC885877
EST:     AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCC                      
genomic: AGCAGCGCATGGGAGCCTCCATCCTCCGCCTCTTCTTCCACGACTGC-T--T-Cgtccaggcac ... tgtaatg