1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atattttgtacactccaccacattttgacagtattccttcgtgtaattatcaccttagcttatcttgtgaaaccaaaggtgttttgaatgacatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGGTGGGGTTGCTTCTGAATGTCTTAAAGATGCTCCTACTTGTCTTGTGAAA
species | Zea mays |
transcript | GRMZM2G157010_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAG ATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGGEST: gi|166681740|gb|EG191617.1|EG191617
genomic: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAGgtatcatttt ... acatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGG
EST: TCTGCCATCACTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAG ATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGEST: gi|148943523|gb|EC888586.2|EC888586
genomic: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAGgtatcatttt ... acatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTG
EST: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAG ATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGGEST: gi|83279433|gb|DV943441.1|DV943441
genomic: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAGgtatcatttt ... acatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGG
EST: TTTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAG ATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGGEST: gi|149077087|gb|EE165744.2|EE165744
genomic: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAGgtatcatttt ... acatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGG
EST: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAG ATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGG
genomic: TCTGCCATCATTTCCTCTGGCATTGATAAGGTCATGGTGGTTGTGATTAGgtatcatttt ... acatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGG
attatcaccttagcttatcttgtgaaaccaaaggtgttttgaatgacatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGGTGGGGTTGCTTCTGAATGTCTTAAAGATGCTCCTACTTGTCTTGTGAAA
ttttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttgtacactccaccacattttgacagtattccttcgtgtaattatcaccttagcttatcttgtgaaaccaaaggtgttttgaatgacatgaatagATATTTTGGAGGCATAAAACTGGGAACCGGTGGACTGGTGAGGGCTTATGGTGGGGTTGCTTCTGAATGTCTTAAAGATGCTCCTACTTGTCTTGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - -caccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaatg