1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttatccatgtatttgtgcaatttccaactctgttttcttttttaaacacagtaagagtaagtaactaagttaacgtggtccacttggttttgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
species | Zea mays |
transcript | GRMZM2G157010_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGACCAG GTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAGEST: gi|211406566|gb|FL207044.1|FL207044
genomic: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAGgttgctctcc ... tgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
EST: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAG GTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAGEST: gi|148943523|gb|EC888586.2|EC888586
genomic: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAGgttgctctcc ... tgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
EST: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAG GTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAGEST: gi|83279433|gb|DV943441.1|DV943441
genomic: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAGgttgctctcc ... tgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
EST: GCCATGGCCTTCCTGGATCAG GTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAGEST: gi|149077087|gb|EE165744.2|EE165744
genomic: GCCATGGCCTTCCTGGATCAGgttgctctcc ... tgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
EST: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAG GTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
genomic: TCGCGGCCCCGGTCCCCAACGAGCGTGCCGCCATGGCCTTCCTGGATCAGgttgctctcc ... tgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
acacagtaagagtaagtaactaagttaacgtggtccacttggttttgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
taagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatccatgtatttgtgcaatttccaactctgttttcttttttaaacacagtaagagtaagtaactaagttaacgtggtccacttggttttgtgtgatagGTCAAGGATCCACGTGCTACCCATAATTGCTGGGCATACAAG
- atccatg
- - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - -aaacaca