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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctccctctcccttaggttagcgcttcatagaacgatatggaacgatatggagaaccttatagtctactgctatgttgcccctgctag

Basic information

species Zea mays
transcript GRMZM2G156218_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156218_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g21630.1 (Oryza sativa), 5'ss of exon 5
CCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctccctctcccttaggttagcgcttcatagaacgatatggaacgatatggagaaccttatagtctactgctat-gttgcccctgctag----
||| |||||||| || |||||||||||||| ||||| || ||||| ||||| || ||||||||| ||||||||||| ||||||||  |||||| || |||||  ||| ||||||||           | || ||||||| | |||  | | |   | |     |  ||  |     || | |||   |||||       
CCCAAAGCGGCTCGGGCAAGTTCTTTTTGTTGATGCACCGTTTGTGTTTCAGCCGATGTGGCAGCTTGTTAAACCTTTGTTGAAACAATATGCATCACTGgtcagct-tccctctctaccc------ctctgcatagaa-gttatttagcaaatggcacttaatcttaccccttcactgttgttattcctgcacataag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60356139|gb|DN223112.1|DN223112
EST:     GCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: GCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|74234556|gb|DT642470.1|DT642470
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|71332306|gb|DR803091.1|DR803091
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|71332305|gb|DR803090.1|DR803090
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|74234555|gb|DT642469.1|DT642469
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA