1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcttggccagccgacctgtaacttatggatatgtcttagtattcaacatgcatttgttcttcataataatgatgatccatgtataatatgctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGGCAGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTG
species | Zea mays |
transcript | GRMZM2G156218_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|71332306|gb|DR803091.1|DR803091
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|211539208|gb|FL281587.1|FL281587
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|71332305|gb|DR803090.1|DR803090
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: CCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|211539211|gb|FL281590.1|FL281590
genomic: CCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAAGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|74234555|gb|DT642469.1|DT642469
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGEST: gi|211539210|gb|FL281589.1|FL281589
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
EST: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAG ACACAAGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
genomic: GTCCAAGCGCCGCCCCGCCAGGAGCCAGCGGTGCCACCTCCACCTCCAAGgtaaacccac ... gctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAG
aacatgcatttgttcttcataataatgatgatccatgtataatatgctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGGCAGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTG
ttcttcataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcttggccagccgacctgtaacttatggatatgtcttagtattcaacatgcatttgttcttcataataatgatgatccatgtataatatgctactgcagACACAGGATCCAGTTGAAAACCAGAAGCTATGTGCCTATTTGGTTGAGAAGGCAGTCAATAGACTTCCGCCAGGAGCAGAGAATATACTTGGGATCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG