1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttgtttgatttttaacgtaatacaagttattttaataaatgctactgttttttgaagtctgggggagtgttgttatatcatgtcagattatataaaagtaaaacaaactatagaatacaagtttttctttggttcttttatttattggctgatgtacagtatatgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGAAATGAGAGGTCATACCCAAGCCCACTTCTTCCTCCACCACCAGCATCT
species | Zea mays |
transcript | GRMZM2G151050_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGEST: gi|4647309|gb|AI622384.1|AI622384
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG GTCTGCGAGGGATGGNGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGEST: gi|4681182|gb|AI629852.1|AI629852
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGEST: gi|47962013|gb|CN844722.1|CN844722
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: GGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCCG GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGEST: gi|83279170|gb|DV943178.1|DV943178
genomic: GGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGEST: gi|78085645|gb|DV514038.1|DV514038
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
caagtttttctttggttcttttatttattggctgatgtacagtatatgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGAAATGAGAGGTCATACCCAAGCCCACTTCTTCCTCCACCACCAGCATCT
ggctgat putative branch site (score: 218)
tgcttct putative PPT
ttcttttatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtttgatttttaacgtaatacaagttattttaataaatgctactgttttttgaagtctgggggagtgttgttatatcatgtcagattatataaaagtaaaacaaactatagaatacaagtttttctttggttcttttatttattggctgatgtacagtatatgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAGAAATGAGAGGTCATACCCAAGCCCACTTCTTCCTCCACCACCAGCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG