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...ttcaaagttactaataggaagtttgcatttttttatgtcagttaccatttatcattttatatgcttcataacatgctgatagaagcttgttgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAATACGAAAGTGCAAATTCTAACACTTTAT
species | Zea mays |
transcript | GRMZM2G151050_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|93012296|gb|EB637816.1|EB637816
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|74233431|gb|DT641345.1|DT641345
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|91876199|gb|EB406156.1|EB406156
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|148954553|gb|EC899991.2|EC899991
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|89247370|gb|DY619156.1|DY619156
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|29168003|gb|CB411263.1|CB411263
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|149106511|gb|EE188403.2|EE188403
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|91871540|gb|EB401497.1|EB401497
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|33942576|gb|CF349176.1|CF349176
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAGCTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|211038878|gb|FL017021.1|FL017021
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGTGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|149100088|gb|EE186140.2|EE186140
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|28873357|gb|CB329357.1|CB329357
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|93013764|gb|EB639284.1|EB639284
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|31909129|gb|CD650764.1|CD650764
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAAEST: gi|71449169|gb|DR830219.1|DR830219
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
EST: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
genomic: GATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgaccga ... tgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAA
catttatcattttatatgcttcataacatgctgatagaagcttgttgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAATACGAAAGTGCAAATTCTAACACTTTAT
atcattttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaagttactaataggaagtttgcatttttttatgtcagttaccatttatcattttatatgcttcataacatgctgatagaagcttgttgaagtgcagACAAGCAAAGGATACACTCAAACTCCTAAAGAAACGTCTTGCAAGCAAGAATACGAAAGTGCAAATTCTAACACTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat