1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgatttcattttattgtttctttttctttgtattttacacccatgatgtattagaacattctttattgtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCGTGTTGTTCAGCGTCATGATGACATAGCAAAGGGGATCCCTCCTGGTACT
species | Zea mays |
transcript | GRMZM2G151050_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGG CGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCGEST: gi|12968050|gb|BG264997.1|BG264997
genomic: TATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGGgtatgatttc ... gtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCG
EST: CAGTGCCGATCCTATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGG CGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCGEST: gi|83279170|gb|DV943178.1|DV943178
genomic: CAGTGCCGATCCTATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGGgtatgatttc ... gtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCG
EST: TATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGG CGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCGEST: gi|78085645|gb|DV514038.1|DV514038
genomic: TATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGGgtatgatttc ... gtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCG
EST: CAGTGCCGATCCTATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGG CGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCG
genomic: CAGTGCCGATCCTATCAATCTCGTGTCATGGATCTTGTTAACAGTACTGGgtatgatttc ... gtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCG
tttctttgtattttacacccatgatgtattagaacattctttattgtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCGTGTTGTTCAGCGTCATGATGACATAGCAAAGGGGATCCCTCCTGGTACT
ttctttattgtctct CT-rich tract
ttgtatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatttcattttattgtttctttttctttgtattttacacccatgatgtattagaacattctttattgtctctgcagCGACGAGAGCCTTTTATTTCAGGCTCTAGGACTAAATGATGAGTTACAGCGTGTTGTTCAGCGTCATGATGACATAGCAAAGGGGATCCCTCCTGGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG