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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctcaaatttctcttccaaaagccactttgtagggttggtgtcagttttctcattaattttttacatactcctacagGAGGACGCTGTCAAGATATTACTTGGTCTGCGTGAGAAATATGAGACTTACCATAAATGCAAATACACTTTAGAAGGGATCAATGCAGCAGTTTACTTGT

Basic information

species Zea mays
transcript GRMZM2G149567_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149567_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g33210.1 (Oryza sativa), 3'ss of exon 6
----------------------------------------------------------------------------------------------------------------gtagctcaaatttctcttccaaaagccactttgtagggttggtgtcagttttctcatta-----attttttacatactcctacagGAGGACGCTGTCAAGATATTACTTGGTCTGCGTGAGAAATATGAGACTTACCATAAATGCAAATACACTTTAGAAGGGATCAATGCAGCAGTTTACTTGT
                                                                                                                 ||  ||||||  |||||  |    |  || | | |||||    ||   ||  ||||||     ||| | |  |     || |||||||| ||||| |||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||| | ||||||||||||||||| ||||
gtaatacaaatttcaatttcagaaatcacttgtctcttagggttacctttcacttaatcattatctcaatctcttgaactctctgctcttggggatacctttcacttgatcattatttcaaat--ctcttgaactctctgctct-tggggttaccttccacttgatcattatttcaattctcttgaactctctgcagGAGGATGCTGTGAAGATATTACTTGGTCTGCGTGAGAAGTATGAGACCTATCACAAATGCAAATACACTTTGGAAAGCATCAATGCAGCAGTTTATTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactttgtagggttggtgtcagttttctcattaattttttacatactcctacagGAGGACGCTGTCAAGATATTACTTGGTCTGCGTGAGAAATATGAGACTTACCATAAATGCAAATACACTTTAGAAGGGATCAATGCAGCAGTTTACTTGT
                             cattaat  putative branch site (score: 3)
                                            tactcct  putative PPT
                       ttttctcattaatttt  TA-rich tract