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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCTCCAGGAACATTGGCTGCAACTTCATCTCGCCGGAGCACATTGCTCTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGgttggtggtcatcttctgttccatactccactcggttaagaaactctctgctattttccatcgtttttggtcagtggtatataaatcacaataatatggc...

Basic information

species Zea mays
transcript GRMZM2G149567_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149567_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g33210.1 (Oryza sativa), 5'ss of exon 1
AGTTCTCCAGGAACATTGGCTGCAACTTCATCTCGCCGGAGCACATTGCTCTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGgttggtggtcat---cttctgttccatactccactcggttaagaaact-ctctgctattttccatcgtttt-tggtcagtggtatataaatcaca-ataatatggc
|||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||   |||| |||||||| ||||| ||   || |||||||||  |   |      || ||| | ||    |||  |||    |  | |||||| ||    || || |||  |  |  |   
AGTTCTCCAGGAACATGGGATGCAACTTCATCTCGCCGGAGCACATTGCGCTCGGCCTCTTCAACCTGAACGATCCCACCACGAACAACGTCCTTAAGAGgtttgtggtgatgttctcctgttccatgttttcccaaaaaaaaaaaatgcttccatatgatccgcgatagtgtggtcaatg---catcaaccacctacgacct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983002|gb|EE028897.2|EE028897
EST:     CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAG                         CTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCA
genomic: CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGgttggtggtc ... tccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCA
EST: gi|89762837|gb|DY690274.1|DY690274
EST:     CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAG                         CTTAGGAGCAGATCCAAGTCAGCTAGCANAACAGGCACTTAAACGTGTCCA
genomic: CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGgttggtggtc ... tccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCA