1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaaagaaacttgtgtttgtcgtagacaaaagtagataaaacctccctgttttgcttttcattattagtgtgatttactggtccactgcatccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCAAGGAGAGCTTGCCAAAGATGGCAGAGAGCCAGTGGGGTTATCTTCTTTC
species | Zea mays |
transcript | GRMZM2G149567_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAG CTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCAEST: gi|89762837|gb|DY690274.1|DY690274
genomic: CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGgttggtggtc ... tccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCA
EST: CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAG CTTAGGAGCAGATCCAAGTCAGCTAGCANAACAGGCACTTAAACGTGTCCA
genomic: CTCGGCCTCTTCGACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGgttggtggtc ... tccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCA
cctgttttgcttttcattattagtgtgatttactggtccactgcatccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCAAGGAGAGCTTGCCAAAGATGGCAGAGAGCCAGTGGGGTTATCTTCTTTC
ttttcattattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaagaaacttgtgtttgtcgtagacaaaagtagataaaacctccctgttttgcttttcattattagtgtgatttactggtccactgcatccggtgtagCTTAGGAGCAGATCCAAGTCAGCTAGCAAAACAGGCACTTAAACGTGTCCAAGGAGAGCTTGCCAAAGATGGCAGAGAGCCAGTGGGGTTATCTTCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- aaagaaa
- - - - - - -tgtttgt
- - - - - - - - - - - -agacaaa
- - - - - - - - - - - - - - - - -agataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgca