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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaatcgacttccaagtttaaactgcagagatgcaacttcattgaaggaaaaaaactatagagatcaagaaatagtagtaatctgaacaaacctttag

Basic information

species Zea mays
transcript GRMZM2G147256_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50323799|gb|CO518925.1|CO518925
EST:     GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: gi|453306|gb|T15280.1|T15280
EST:     GTGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGTAGACAGGTGGGAGT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATG-AGACAGGTGGGAGT
EST: gi|71299598|gb|DR785812.1|DR785812
EST:     GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: gi|148945236|gb|EC890443.2|EC890443
EST:     CGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTTGACA-G                         GCCAGAATTCTCC
genomic: CGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATT-GACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCC
EST: gi|76912289|gb|DV164659.1|DV164659
EST:     GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: gi|71437980|gb|DR819030.1|DR819030
EST:     GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTTCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: gi|71448613|gb|DR829663.1|DR829663
EST:     GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGGGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: gi|71766307|gb|DR964244.1|DR964244
EST:     GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG                         GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT