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gtcagatcaatcgacttccaagtttaaactgcagagatgcaacttcattgaaggaaaaaaactatagagatcaagaaatagtagtaatctgaacaaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTCTTTGTGCTGCTGCTCATGTTGCCGTTCGTGACACTGTGGGAAAGCTTG
species | Zea mays |
transcript | GRMZM2G147256_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTEST: gi|453306|gb|T15280.1|T15280
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: GTGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGTAGACAGGTGGGAGTEST: gi|71299598|gb|DR785812.1|DR785812
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATG-AGACAGGTGGGAGT
EST: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTEST: gi|148945236|gb|EC890443.2|EC890443
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: CGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTTGACA-G GCCAGAATTCTCCEST: gi|76912289|gb|DV164659.1|DV164659
genomic: CGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATT-GACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCC
EST: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTEST: gi|71437980|gb|DR819030.1|DR819030
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTTCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTEST: gi|71448613|gb|DR829663.1|DR829663
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGGGGGAGTTEST: gi|71766307|gb|DR964244.1|DR964244
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
EST: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG GCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
genomic: GCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAGgtcagatcaa ... aaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTT
gaaggaaaaaaactatagagatcaagaaatagtagtaatctgaacaaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTCTTTGTGCTGCTGCTCATGTTGCCGTTCGTGACACTGTGGGAAAGCTTG
ccttt CT-rich tract
aaaaaaactataga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagatcaatcgacttccaagtttaaactgcagagatgcaacttcattgaaggaaaaaaactatagagatcaagaaatagtagtaatctgaacaaacctttagGCCAGAATTCTCCGGAAGACCCTAGGCGGTGGAATGAGACAGGTGGGAGTTCTTTGTGCTGCTGCTCATGTTGCCGTTCGTGACACTGTGGGAAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT