Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcggtttgctggtcattgtgctcggtatacagcctgcatatatttggctgtagctaacatatgactggtgattattttctccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG

Basic information

species Zea mays
transcript GRMZM2G147256_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335428|gb|CO530554.1|CO530554
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAG
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAG
EST: gi|50323799|gb|CO518925.1|CO518925
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|453306|gb|T15280.1|T15280
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTAAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGTGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|71299598|gb|DR785812.1|DR785812
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|71424593|gb|DR806375.1|DR806375
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGAT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGAT
EST: gi|74236570|gb|DT644484.1|DT644484
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGAT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGAT
EST: gi|31363479|gb|CD447836.1|CD447836
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAGAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGTGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|148945236|gb|EC890443.2|EC890443
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|93284472|gb|EB676736.1|EB676736
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGT
EST: gi|76912289|gb|DV164659.1|DV164659
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|78082345|gb|DV510757.1|DV510757
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GGATGCCTATCGAAAGGGTTAGG
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGG
EST: gi|71437980|gb|DR819030.1|DR819030
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|71448613|gb|DR829663.1|DR829663
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
EST: gi|71766307|gb|DR964244.1|DR964244
EST:     CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG                         GTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT
genomic: CACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGgtatgtttcg ... ccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatatatttggctgtagctaacatatgactggtgattattttctccggaactagGTATGCCTATCGAAAGGGTTAGGCGCACCCGTCGGATCAGTGATTGTTGGTTCGAAGGCCTTCATTGACAAG
                agctaac  putative branch site (score: 2)
                                    ttattttctcc  putative PPT
                                 tgattatttt  TA-rich tract