1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttctactctttttctttttgaaaaatattcttttcttccattttctaccttggtgtggtcatgatgttttcctgagttctaaggatgccctttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGCCAGAGAGAGCCTAGTGGTAACATTCAGAAGCTTGCTTTCGGCAATGTG
species | Zea mays |
transcript | GRMZM2G134903_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGCCTGAA CATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGEST: gi|37396918|gb|CF635753.1|CF635753
genomic: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGTCTGAAgtgagttcta ... ttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
EST: TAATCGTCCAACTATCCGCCTGAA CATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGEST: gi|78090374|gb|DV518748.1|DV518748
genomic: TAATCGTCCAACTATCCGTCTGAAgtgagttcta ... ttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
EST: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGTCTGAA CATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGEST: gi|485618|gb|T18688.1|T18688
genomic: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGTCTGAAgtgagttcta ... ttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
EST: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGCCTGAA CATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGEST: gi|15590440|gb|BI675056.1|BI675056
genomic: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGTCTGAAgtgagttcta ... ttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
EST: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGCCTGAA CATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGEST: gi|45848101|gb|CN072044.1|CN072044
genomic: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGTCTGAAgtgagttcta ... ttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
EST: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGCCTGAA CATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
genomic: CCCCTGATTAAGAAGTATGGATACATTAATCGTCCAACTATCCGTCTGAAgtgagttcta ... ttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATG
accttggtgtggtcatgatgttttcctgagttctaaggatgccctttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGCCAGAGAGAGCCTAGTGGTAACATTCAGAAGCTTGCTTTCGGCAATGTG
tgccctttccttgc CT-rich tract
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctactctttttctttttgaaaaatattcttttcttccattttctaccttggtgtggtcatgatgttttcctgagttctaaggatgccctttccttgcagCATCCCTCCTATTTCCAACAGCGATGCGGTGGCCTTCTCAACTGATATATGCCAGAGAGAGCCTAGTGGTAACATTCAGAAGCTTGCTTTCGGCAATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC