1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acctgatagcattatcttgttatgtacggagtacggaccggccttgtcttttcatgaagaaagaagccgcactgacataactcctctcaactcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAGGGAGGCGTTCACTGAGATTGGTCGCTCACCTCCTCAGCCCAAGGGGAT
species | Zea mays |
transcript | GRMZM2G134903_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACG GGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAEST: gi|78090375|gb|DV518749.1|DV518749
genomic: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACGgtgagcctct ... ctcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
EST: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACG GGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAEST: gi|71444553|gb|DR825603.1|DR825603
genomic: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACGgtgagcctct ... ctcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
EST: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACG GGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAEST: gi|78079191|gb|DV507603.1|DV507603
genomic: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACGgtgagcctct ... ctcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
EST: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACG GGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAEST: gi|78088850|gb|DV517243.1|DV517243
genomic: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACGgtgagcctct ... ctcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
EST: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACG GGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAEST: gi|71771108|gb|DR969045.1|DR969045
genomic: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACGgtgagcctct ... ctcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
EST: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACG GGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
genomic: GGCGCCGCCCTTCCGCGACGTCGCCGATGCCGTCTACGACCTCCTCAACGgtgagcctct ... ctcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAA
gtcttttcatgaagaaagaagccgcactgacataactcctctcaactcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAGGGAGGCGTTCACTGAGATTGGTCGCTCACCTCCTCAGCCCAAGGGGAT
ctcctctcaactcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgatagcattatcttgttatgtacggagtacggaccggccttgtcttttcatgaagaaagaagccgcactgacataactcctctcaactcctgacagGGCGGGTCTGGGCAGGGCACAACATTGTGAGGTTTGATTCTGCAAGAATAAGGGAGGCGTTCACTGAGATTGGTCGCTCACCTCCTCAGCCCAAGGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgcac