1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatacaactatgtgttgacctagagctagcctgtaatttagagaagcctgttttagatagagttgagtaataatgatagttcgatttgtatcgtggttaaaactaacagcaatatctagtggaatttgtctgttccttctaacattgaaagggatgtctcgttgtctcatgggctgtccttgcctgttttacatgcagATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG
species | Zea mays |
transcript | GRMZM2G134903_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAG ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAEST: gi|78090375|gb|DV518749.1|DV518749
genomic: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAGgtatacaact ... ttacatgcagATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAA
EST: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAG ATGGCAAGCTTGGCAAATTACTTTGGAEST: gi|15590441|gb|BI675057.1|BI675057
genomic: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAGgtatacaact ... ttacatgcagATGGCAAGCTTGGCAAATTACTTTGGA
EST: CTTGCGCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAG ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAGEST: gi|71444553|gb|DR825603.1|DR825603
genomic: CTTGC-CTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAGgtatacaact ... ttacatgcagATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG
EST: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAG ATGGCAAGCTTGGCAAATTACTTTGEST: gi|78079191|gb|DV507603.1|DV507603
genomic: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAGgtatacaact ... ttacatgcagATGGCAAGCTTGGCAAATTACTTTG
EST: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAG ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG
genomic: CCTTGCCTCTGCTTACCCAACGCTTTGGGAGGAGGGCAGGGGACATGAAGgtatacaact ... ttacatgcagATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG
attgaaagggatgtctcgttgtctcatgggctgtccttgcctgttttacatgcagATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG
tccttgcctgtttt CT-rich tract
ttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacaactatgtgttgacctagagctagcctgtaatttagagaagcctgttttagatagagttgagtaataatgatagttcgatttgtatcgtggttaaaactaacagcaatatctagtggaatttgtctgttccttctaacattgaaagggatgtctcgttgtctcatgggctgtccttgcctgttttacatgcagATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG