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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTTGTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtattcatcctagacacattgtctactattttgatccag

Basic information

species Zea mays
transcript GRMZM2G131118_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTTGTAGAAAAGgtttcttctgcagatt---tatgattt----ttattccataagttgttgaattttgta-ttcatcctagac-----acattgtctactattttgatccag
||||||||||||||| ||||| |||||| | |||||| | |||||||||||||||| |||||||||||||  |||| ||||||   ||| ||||    | |||  |      | ||  || |  | ||||| ||||||      ||||    ||| ||||| || ||
CTCAAAGGATGTGCTTATGCGCGTTGTGACACAAAATCTCTCTCCTGAGTTAACTCATGTAGAAAAGgttgtttctccagattgaatattattttaaatgatttaaactaccgatgggttatacaattcattctagactaacagcattactcactgttttgctcaag

upper sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTTGTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgt-----tgaattttgtattcatcctagacacattgtctactattttgatccag--------------------------------------------------------------
 ||||||||  | || |||||||||||||| |||||| ||||||||||||| ||||| || |||||||||  |  | |   || || |||| | ||    ||||        || |    |  |   |   |||     | |||  | ||| | ||                                                                 
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttctttttaat-atttgttttttggaagtgacatgagtggaaagagggtcattgtgagaggtcctttcttttgtttggttctgattttttgctaagtattcagaactgagttgattttctacttgattcttccctttctcacgtag

upper sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTTGTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtat----tcatcctagacacattgtctactattttgatccag--------------------------------------------------------------
 ||||||||  | || |||||||||||||| |||||| ||||||||||||| ||||| || |||||||||  |  | ||  || || |||| | ||    ||||   |  | |    |     || |  |        | |||  | ||| | ||                                                                 
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaat-atttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag

upper sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTTGTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtattcatcctagacacattgtctactattttga----tccag---------
 ||||||||| | || ||||| |||||||| |||||  ||||||||||||| ||||| || |||||||||  |  ||   |  ||   || |    |      ||||| |  | | | |   |   |  || || | | | ||||  ||    | ||          
TTCAAAGGATATTCTTATGCGGGTTGTGGCACAAAACCTTTCTCCTGAGTTGACTCTGGTGGAAAAGgttgttgttgtgaaactactgttgtataactgatcattgtttatatgtatgtgttttgaatgcatatagcccattattgagaatatttcataatgcctga