Sequence
atgc intronic sequence ATGC exonic sequence...tgcataggctaaacctcattatttcaatgttccttgaataaacttactttgaggtatgttattcctgtctctgaagttaatatgttttttcttattatagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G131118_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 3'ss of exon 3
tgcataggctaaacctcattatttcaatgttccttgaataaacttactttgaggtatgtt---attcctgtctctgaagttaatatgtttt-ttcttattatagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
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---atgggctcatcattccaattgttttatatactgtctctccgtattccaag-tatgttcattttcctctccttagagctaatatgaaacactcacgttttagGAAAATTTAGGCACCTCCCAGTGGTGGAAAATGGTGAGGTTATTGCCATGCTAGACATTGCAAAATGCCTCTATGATGCAATATCAAGACTGGAAAAGGC
upper sequence: GRMZM2G131118_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G16570.2 (Glycine max), 3'ss of exon 3
tgcataggctaaacctcattatttca-atgttccttga-ataaacttactttga--ggtatgttattc-ctgtctctgaagt-taatatgttttttctta--ttatagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
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--------ggattctctatttttatacatcttgtttgatagaatcatagtctggctggaaagtaattcattaagtgagagatataatttaactttttttaactgatagGTAGATTTAGACACCTCCCTGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTTTATGATGCCATATCTAGAATGGAGAGCGC
upper sequence: GRMZM2G131118_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G38480.1 (Glycine max), 3'ss of exon 3
tgcataggctaaacctcattatttcaatgttccttgaataaacttac--tttga--ggtatgttattc-ctgtctctgaagt-taatatgttttttcttattatagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
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------tattagattctctgtttatacatcttgtttaatagagtcatagtcggactggaaactaattcattaagtgagagatataatttgactttttaactgatagGTAAATTCAGACACCTCCCTGTCGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATTACCAAATGCCTTTATGATGCCATATCTAGGATGGAGAGCGC
upper sequence: GRMZM2G131118_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 3
tgcataggctaaacctcattatttcaatgttccttgaataaacttactttgaggtatgttattcctgtctctg----aagttaatatgttttttcttatta-tagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
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--tatttatttcatttcat-atatgcacttcatttgaatgaatt--ctttattacttattagcctaatatttgttttatggcatcttgcttgtgttggtcaacagGCAAGTTTAGGCACCTCCCTGTTGTAGAAAATGGTGAAGTTATTGCCATATTGGATATTACAAAGTGCCTCTATGATGCTATATCTCGAATGGAGAAGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttgaggtatgttattcctgtctctgaagttaatatgttttttcttattatagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
tgttttttcttatt CT-rich tract
tgaagttaatatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcataggctaaacctcattatttcaatgttccttgaataaacttactttgaggtatgttattcctgtctctgaagttaatatgttttttcttattatagGGAAATTTAGACACCTTCCGGTTGTTGAAAATGGTGAGGTTATTGCGATGCTGGACATTGCAAAATGTCTCTATGATGCAATATCAAGACTGGAAAAGGC
tgcatag
- - - - - - - - - - - - - -tgttcct
- - - - - - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttt