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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGGTGTCCTCCAATATTACCTGCATTTTCTGCCGTATTGAAAGgtactcaaatctgagcacatgccattctccattgactgcattttctgggatcatcatgccatcatcaggctatagatagatgatagtttctatcctcttgcag

Basic information

species Zea mays
transcript GRMZM2G130287_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130287_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g44560.1 (Oryza sativa), 5'ss of exon 7
ACTCGGTGTCCTCCAATATTACCTGCATTTTCTGCCGTATTGAAAGgtactc-----aaatctgagcacatgccattctccattgactgcattttctgggatca-------tcatgccatcatcaggct---atagatagat---gatagtttctatcctcttgcag
|| ||| | |||||||| |||||||||||||||||| | |||||||||||||     |  | |  |   ||| ||||||| | ||      ||| |||||||         |  ||     || |  ||   ||  | | |    |||| |||| ||| ||||| ||
ACCCGGCGACCTCCAATCTTACCTGCATTTTCTGCCTTGTTGAAAGgtactctctctatttttaggtgtatgtcattctc-actgctacgctttcctgggattggtttctctgttgttgatataaaacttatatgaagaaactaagataatttccatcgtcttgtag