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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtgattctttgtcttgatatcttggtttagattgagatgctaagtaacatgaatctcctcatacatgatctgacaactcttagtgttattctacagATGAAGTTCTGGGCTAAGGTACATGATGTGAACTGCCCCAAAGATCGAACAATGAGCTCTATGGCAATTATTTCTTTAGTTTCTTTTCATTTACAG

Basic information

species Zea mays
transcript GRMZM2G130287_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130287_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g44560.1 (Oryza sativa), 3'ss of exon 5
gtatagtgattctttgtcttgatatcttggtttagattgagatgctaa--gtaacatgaatctcctca-----------tacatgatctgaca---actcttagtgtta-ttctacagATGAAGTTCTGGGCTAAGGTACATGATGTGAACTGCCCCAAAGATCGAACAATGAGCTCTATGGCAATTATTTCTTTAGTTTCTTTTCATTTACAG
|||| |  ||||| ||||    | | || |||   || |  |    ||  ||  || ||||| ||  |           || |  || |||||   ||  ||  ||||| |||| |||||||| |||||||| |||| ||||||||| || ||||||| |||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||
gtattgcaattctctgtcacatttttttcgttccaatgggcaataaaattgttgcaagaatccccataaagtggccttctaaaatatgtgacaccaaccgtttctgttaattctgcagATGAAATTCTGGGCAAAGGCACATGATGTTAATTGCCCCAGAGATCGAACAATGAGCTCAATGGCGATTATCTCTTTAGTTGCTTTCCATTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtaacatgaatctcctcatacatgatctgacaactcttagtgttattctacagATGAAGTTCTGGGCTAAGGTACATGATGTGAACTGCCCCAAAGATCGAACAATGAGCTCTATGGCAATTATTTCTTTAGTTTCTTTTCATTTACAG
                                            ttattct  CT-rich tract
                                            ttattcta  TA-rich tract