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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgacctgaatgtatactatggctgttcaagaaacactttttaattttagaacaagggaaacaaaatgtgctcattaaattgtgtaatgtggattgcagACTCGGTGTCCTCCAATATTACCTGCATTTTCTGCCGTATTGAAAG

Basic information

species Zea mays
transcript GRMZM2G130287_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130287_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g44560.1 (Oryza sativa), 3'ss of exon 6
---------------------------------------------------------------------------------------------------tgtgacctgaatgtatactatggctgttcaag--aaacactttttaattttagaacaagggaaacaaaatgtgctcattaaattgtgtaatgtggattgcagACTCGGTGTCCTCCAATATTACCTGCATTTTCTGCCGTATTGAAAG
                                                                                                   |    |||| |||||||   | || ||| |    ||   ||||||  | || | | || |  ||  |||    ||  |||  ||    |||||||||| ||||| ||| | |||||||| |||||||||||||||||| | |||||||
gtttgttactttgacttgagtttttattggactttttagtcatgagtatcaagtagttagggtagcttcaatggcctcatggaatttccattaaagttctacagcctgtatgtataagcttgcagttaatcctaagtccttttttctgttggcaaaaagagaaataaacacacttttta--ttaaacaatgtggattacagACCCGGCGACCTCCAATCTTACCTGCATTTTCTGCCTTGTTGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagaacaagggaaacaaaatgtgctcattaaattgtgtaatgtggattgcagACTCGGTGTCCTCCAATATTACCTGCATTTTCTGCCGTATTGAAAG
                             attaaattgtgtaat  TA-rich tract