1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcctactgctaaaaaaaaatcactcgacttcgattcgatgcccagtgctgttttttcctttctgaaacttctgatctcgtgaacaaacaatgcagGACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCGAGCCGTTCCTGATCGACGAGAAGAGGGTAACGGCCAAGTACGTGGTGTT
species | Zea mays |
transcript | GRMZM2G128072_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCGEST: gi|78080696|gb|DV509108.1|DV509108
genomic: CGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtgcctactg ... aacaatgcagGACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCG
EST: CGACGTCCCTTATTGTTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCGEST: gi|211025631|gb|FL318869.1|FL318869
genomic: CGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtgcctactg ... aacaatgcagGACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCG
EST: CGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCCAAGGGCTTCGCGCTATCGTCCTACAGTTTTTAGGTGAGCACCATCG
genomic: CGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtgcctactg ... aacaatgcagGACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCG
cccagtgctgttttttcctttctgaaacttctgatctcgtgaacaaacaatgcagGACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCGAGCCGTTCCTGATCGACGAGAAGAGGGTAACGGCCAAGTACGTGGTGTT
ttctgat putative branch site (score: 5)
tgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctactgctaaaaaaaaatcactcgacttcgattcgatgcccagtgctgttttttcctttctgaaacttctgatctcgtgaacaaacaatgcagGACCCAAGGGCTTCGCGCTATCGTCCTACAGCAACGAGGTGAGCACCATCGAGCCGTTCCTGATCGACGAGAAGAGGGTAACGGCCAAGTACGTGGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG