1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatcgagaggctgaaccgtttgctgttgctctgttttgatctcctgcgtgcagttagcaagaagaaggacggtgccaataaggaggccacagcggccaagCCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATCATCCCGCCGCTGAAGGCCGCCTTGGAGGCGGAGGAGGACGTGTCCCAGG
species | Zea mays |
transcript | GRMZM2G128072_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCCGCATGCTGCCGGTCGTCCACCGCCGATCGTGAAACGCAACCGTCG CCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATCEST: gi|211025631|gb|FL318869.1|FL318869
genomic: GATCCGCATGCTGCCGGTCGTCCACCGCCGATCGTGAAACGCAACCGTCGccgtacgttc ... agcggccaagCCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATC
EST: GATCCGCATGCTGCCGGTCGTCCACCGCCGATCGTGAAACGCAACCGTCG CCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATC
genomic: GATCCGCATGCTGCCGGTCGTCCACCGCCGATCGTGAAACGCAACCGTCGccgtacgttc ... agcggccaagCCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATC
gcgtgcagttagcaagaagaaggacggtgccaataaggaggccacagcggccaagCCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATCATCCCGCCGCTGAAGGCCGCCTTGGAGGCGGAGGAGGACGTGTCCCAGG
aataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcgagaggctgaaccgtttgctgttgctctgttttgatctcctgcgtgcagttagcaagaagaaggacggtgccaataaggaggccacagcggccaagCCGAAGAAGGCCGCGGCGCTGCCGCTGCCGGAGATGATGCAGGAGGAGATCATCCCGCCGCTGAAGGCCGCCTTGGAGGCGGAGGAGGACGTGTCCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - -gctgaac
- - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcca