1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtagtcactagtcagtgcctagctactcaatcagcttactgagcattgtctgggaaactcgatcgagatcgctcccacaaattagccggcagatttctgatccatctagtgctcatggattgcagCTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAG
species | Zea mays |
transcript | GRMZM2G128072_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCGGAGGAGGACGTGTCCCAGGTCCAGCTCGCCTTCGAAAACAACACG CTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTCEST: gi|78080696|gb|DV509108.1|DV509108
genomic: AGGCGGAGGAGGACGTGTCCCAGGTCCAGCTCGCCTTCGAAAACAACACGgtgagtagtc ... tggattgcagCTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTC
EST: GGGCGGAGGAGGACGTGTCCCAGGTCCAGCTCGCCTTCGAAAACAACACG CTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTTTGGGCCTTCEST: gi|211025631|gb|FL318869.1|FL318869
genomic: -GGCGGAGGAGGACGTGTCCCAGGTCCAGCTCGCCTTCGAAAACAACACGgtgagtagtc ... tggattgcagCTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTC
EST: AGGCGGAGGAGGACGTGTCCCAGGTCCAGCTCGCCTTCGAAAACAACACG CTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTC
genomic: AGGCGGAGGAGGACGTGTCCCAGGTCCAGCTCGCCTTCGAAAACAACACGgtgagtagtc ... tggattgcagCTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTC
gctcccacaaattagccggcagatttctgatccatctagtgctcatggattgcagCTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAG
ttctgat putative branch site (score: 5)
acaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagtcactagtcagtgcctagctactcaatcagcttactgagcattgtctgggaaactcgatcgagatcgctcccacaaattagccggcagatttctgatccatctagtgctcatggattgcagCTAGAGGGATCCTTCATAAAGGACGACGTCCCTTATTGTTTCTGGGCCTTCTTTCCAAAAGGAGACCTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA