1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacttgcattttatcatattttatggaaatccatcactggagcaagttgatattacaaccaatatttatttgtgcttattgcttttatagcagTTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC
species | Zea mays |
transcript | GRMZM2G125432_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGATGCCACAAGATCTGGAAATGTGTCCCGCTATATCAATCACAG TTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTGEST: gi|60395411|gb|DN228281.1|DN228281
genomic: TTGATTGATGCCACAAGATCTGGAAATGTGTCCCGCTATATCAATCACAGgtacttgcat ... tttatagcagTTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTG
EST: AAGATCTGGAAATGTGTCCCGCTATATCAATCACAG TTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTG
genomic: AAGATCTGGAAATGTGTCCCGCTATATCAATCACAGgtacttgcat ... tttatagcagTTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTG
ggagcaagttgatattacaaccaatatttatttgtgcttattgcttttatagcagTTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC
agttgat putative branch site (score: 26)
ttgctttt putative PPT
atattacaaccaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgcattttatcatattttatggaaatccatcactggagcaagttgatattacaaccaatatttatttgtgcttattgcttttatagcagTTGTTCCCCAAATCTCAGCACCCGATTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG