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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaattcgcactttaatattccttgcaatttattttaatgttgccaaattttgtagGGTTGGGCTATTAGAGCTGCCGAACCTATTCCACAGGGTACCTTTGTCTGCGAGTATATTGGTGAAGTTGTGAAGGCCGACAAGACCATGAAAAATGCAG

Basic information

species Zea mays
transcript GRMZM2G125432_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125432_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g47900.1 (Oryza sativa), 3'ss of exon 3
------------------------------------------------gtatgtaattcgcactttaatattccttgcaatt--tattttaatgttgccaaattttgtagGGTTGGGCTATTAGAGCTGCCGAACCTATTCCACAGGGTACCTTTGTCTGCGAGTATATTGGTGAAGTT------GTGAAGGCCGACAAGACCATGAAAAATGCAG
                                                   | | |     |  | ||   | ||| ||| |  ||||||  | ||| |||||  || ||||||||||| ||||||| || ||||||||||||||||| || ||||| || ||||| ||||| || |||       ||||||  ||   | |||| | |       
gtgaaatattctccacttgtttttttggtttcctgagcgttgcaccttacctttgacgtcaagataaaacctgcttacaagtgatatttttgttttgtcaaatgctgcagGGTTGGGCTGTTAGAGCCGCAGAACCTATTCCACAGGGCACATTTGTATGTGAGTACATTGGAGAGGTTTTGAAGATGAAGGATGATGGGGCCATAAGAC------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcgcactttaatattccttgcaatttattttaatgttgccaaattttgtagGGTTGGGCTATTAGAGCTGCCGAACCTATTCCACAGGGTACCTTTGTCTGCGAGTATATTGGTGAAGTTGTGAAGGCCGACAAGACCATGAAAAATGCAG
                               ttttaat  putative branch site (score: 3)
          tttaatattccttgca  TA-rich tract